Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1910g00008 ATGGGAAAAGGAGAGGAAGATGCAGTGAACACCAATGGCGGCTACGAAGGAATCGGAATTTGGAAGGGGAGACACAGTCCCGCTAACAGGCTTCCCAAGGCATTAGTCCTAGCACCTACTAGGGAGTTAGCCAAGCAAGTTGAGAAGGAGATACAGGAATCTGCTCCTTACGTGAAAACGGTTTGTGTTTATGGGGGTGTTTCTTATGTAACGCAGCAGAGTGCGCTTTCGCGAGGTGTTGATGTGGTGGTTGGAACACCGGGTAGAATAATTGATCTATTGAATGGAGGTAGCCTTACTCTGAGTGAGGTGCAGTATTTGGTGCTTGATGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGACGTGGAGGTCATTTTGGATAAGGTCCCTGCGCAGCGCCAGACCATGCTGTTTTCTGCTACCATGCCTGGTTGGGTCAAGAAACTGTCCAGAAAGCATTTGAACAATCCTTTGACAATTGATTTGGTTGGCGAACAAGAAGAGAAACTTGCTGAAGGGATCAAACTTTATGCTTTATCAGCCACTGCCACTTCAAAACGGACAGTTCTGTCTGATCTTATAACTGTTTATGCAAAGGGTGGAAAGACTATTGTTTTTACGCAGACAAAAAAGGATGCTGATGAAGTATCATTGGCATTAACGAGTAGTATAGCCTCTGAAGCACTGCATGGTGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTTCGACAAGGGAAATTCACAGTGCTTGTTGCCACTGATGTTGCTGCTCGTGGACTTGATATTCCGAATGTTGATTTGGTTATACATTATGAACTTCCCAATGATGCTGAGACTTTTGTACATCGTTCTGGTCGCACTGGGCGGGCAGGAAAAGAGGGTACTGCCATATTGATGTACACCAGTAGCCAGAAGAGAACAGTTAGATCCCTTGAGCATGATGTTGGCTGCAAATTTGAATTCATTAGTCCACCGGCTATGGAAGAAATTTTGGAGTCATCTGCTGAACAAGTTGTTGCTACACTTAATAGAGTTCATCCAGAGTCTGTGAAGTTTTTCACTGCAACTGCGCAAAAACTGGTTGAAGAACAAGGAGCAAGTGCCCTTGCAGCTGCTCTAGCACAGATGAGTGGATTCTCTCAACCTCCATCATGTCGGTCTCTTATCAATCATGAACAGGGATGGATTACACTACAACTTACACGAGATTCAGACACTTCTGGAAGATTTTTTTCTGCAAGATCTGTCACTGGGTTTCTTTCTGATGTTTATTCTCCAGCTGCTGATGAAGTTGGAAAAATACATTTAATTGCAGATGAGAGGATTAAAGGAGCTGTCTTTGATCTCCCGGAGGAAGTTGCTAGAGAGTTGCTCAAAAAGGAACTGCCTTCTGGAAACACTATTTCCAAAATCACCAAATTACCTCCTTTGCAAGACGATGAACCTGCAAGTGATTTCTATGGGAAGTTTTCTGACAGAGACAGAAGTAACCGAAGGGGTTCTAATTCTAGGGATCAAAGAGGCTTTAGAAGTTCACGAGGATGGGAAGGAGGCCAAGACTCTGATGATGAGTTCGGAAGAGGCAGTAGAAATTTCAGATCAGGCAACAATAGGTCTCGAATGGGAAAAAACAGCGGCGATGACTGGCTAATTGGAGGTGGACGATCCAACAGATTTTCATCATCCAACAGAAGCGGGCACGGAGGGGCCTGTTTCAATTGTGGACAACCTGGCCATCGAGCTGCAGATTGTCGCAAAAAACGAGACTTTTTCTAG 1791 0.4461 MGKGEEDAVNTNGGYEGIGIWKGRHSPANRLPKALVLAPTRELAKQVEKEIQESAPYVKTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLLNGGSLTLSEVQYLVLDEADQMLAVGFEEDVEVILDKVPAQRQTMLFSATMPGWVKKLSRKHLNNPLTIDLVGEQEEKLAEGIKLYALSATATSKRTVLSDLITVYAKGGKTIVFTQTKKDADEVSLALTSSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGRAGKEGTAILMYTSSQKRTVRSLEHDVGCKFEFISPPAMEEILESSAEQVVATLNRVHPESVKFFTATAQKLVEEQGASALAAALAQMSGFSQPPSCRSLINHEQGWITLQLTRDSDTSGRFFSARSVTGFLSDVYSPAADEVGKIHLIADERIKGAVFDLPEEVARELLKKELPSGNTISKITKLPPLQDDEPASDFYGKFSDRDRSNRRGSNSRDQRGFRSSRGWEGGQDSDDEFGRGSRNFRSGNNRSRMGKNSGDDWLIGGGRSNRFSSSNRSGHGGACFNCGQPGHRAADCRKKRDFF 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1910g00008 596 SUPERFAMILY Retrovirus zinc finger-like domains 557 594 IPR036875 GO:0003676|GO:0008270
Vium1910g00008 596 MobiDBLite consensus disorder prediction 560 574 - -
Vium1910g00008 596 MobiDBLite consensus disorder prediction 473 584 - -
Vium1910g00008 596 SMART ultradead3 2 179 IPR014001 -
Vium1910g00008 596 CDD DEADc 29 163 - -
Vium1910g00008 596 ProSiteProfiles Zinc finger CCHC-type profile. 576 591 IPR001878 GO:0003676|GO:0008270
Vium1910g00008 596 Pfam Zinc knuckle 575 591 IPR001878 GO:0003676|GO:0008270
Vium1910g00008 596 CDD GUCT_Hera 391 470 - -
Vium1910g00008 596 Pfam DEAD/DEAH box helicase 31 151 IPR011545 GO:0003676|GO:0005524
Vium1910g00008 596 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 26 531 - -
Vium1910g00008 596 SMART helicmild6 216 296 IPR001650 -
Vium1910g00008 596 SMART c2hcfinal6 575 591 IPR001878 GO:0003676|GO:0008270
Vium1910g00008 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 315 IPR027417 -
Vium1910g00008 596 Gene3D - 20 166 IPR027417 -
Vium1910g00008 596 Pfam Helicase conserved C-terminal domain 190 296 IPR001650 -
Vium1910g00008 596 CDD SF2_C_DEAD 188 305 - -
Vium1910g00008 596 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 162 IPR014001 -
Vium1910g00008 596 Gene3D - 178 383 IPR027417 -
Vium1910g00008 596 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 191 336 IPR001650 -
Vium1910g00008 596 Gene3D - 567 594 - -
Vium1910g00008 596 Pfam GUCT (NUC152) domain 383 483 IPR012562 GO:0003723|GO:0004386|GO:0005524
Vium1910g00008 596 MobiDBLite consensus disorder prediction 490 534 - -
Vium1910g00008 596 FunFam Nucleolar RNA helicase II 184 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1910g00008 Vium-Chr1910 29419 43993 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1910g00008 33 318 Eukaryotic Initiation Factors Gene Family AT1G72730 38.621 1.65e-55 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1910g00008 - - vum:124828342 1130.16