Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1910g00007 ATGTGTTTTAATAACAGGAAATTGATTATGATGTTTTTTTTCTCTTTTTTGGTGAACAAGGTTGGCGAACAAGAAGAGAAACTTGCTGAAGGGATCAAACTTTATGCTTTATCAGCCACTGCCACTTCAAAACGGACAGTTCTGTCTGATCTTATAACTGTTTATGCAAAGGGTGGAAAGACTATTGTTTTTACGCAGACAAAAAAGGATGCTGATGAAGTATCATTGGCATTAACGAGTAGTATAGCCTCTGAAGCACTGCATGGTGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTTCGACAAGGGAAATTCACAGTGCTTGTTGCCACTGATGTTGCTGCTCGTGGACTTGATATTCCGAATGTTGATTTGGTTATACATTATGAACTTCCCAATGATGCTGAGACTTTTGTACATCGTTCTGGTCGCACTGGGCGGGCAGGAAAAGAGGGTACTGCCATATTGATGTACACCAGTAGCCAGAAGAGAACAGTTAGATCCCTTGAGCATGATGTTGGCTGCAAATTTGAATTCATTAGTCCACCGGCTATGGAAGAAATTTTGGAGTCATCTGCTGAACAAGTTGTTGCTACACTTAATAGAGTTCATCCAGAGTCTGTGAAGTTTTTCACTGCAACTGCGCAAAAACTGGTTGAAGAACAAGGAGCAAGTGCCCTTGCAGCTGCTCTAGCACAGATGAGTGGATTCTCTCAACCTCCATCATGTCGGTCTCTTATCAATCATGAACAGGGATGGATTACACTACAACTTACACGAGATTCAGACACTTCTGGAAGATTTTTTTCTGCAAGATCTGTCACTGGGTTTCTTTCTGATGTTTATTCTCCAGCTGCTGATGAAGTTGGAAAAATACATTTAATTGCAGATGAGAGGATTAAAGGAGCTGTCTTTGATCTCCCGGAGGAAGTTGCTAGAGAGTTGCTCAAAAAGGAACTGCCTTCTGGAAACACTATTTCCAAAATCACCAAATTACCTACTTTGCAAGACGATGAACCTGCAAGTGATTTCTATGGGAAGTTTTCTGACAGAGACAGAAGTAACCGAAGGGGTTCTAATTCTAGGGATCAAAGAGGCTTTAGAAGTTCACGAGGATGGGAAGGAGGCCAAGACTCTGATGATGAGTTCGGAAGAGGCAGTAGAAATTTCAGATCAGGCAACAATAGGTCTCGAATGGGAAAAAACAGCGGCGATGACTGGCTAATTGGAGGTGGACGATCCAACAGATTTTCATCATCCAACAGAAGCGGGCACGGAGGGGCCTGTTTCAATTGTGGACAACCTGGCCATCGAGCTGCAGATTGTCGCAAAAAACGAGACTTTTTCTAG 1359 0.4238 MCFNNRKLIMMFFFSFLVNKVGEQEEKLAEGIKLYALSATATSKRTVLSDLITVYAKGGKTIVFTQTKKDADEVSLALTSSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGRAGKEGTAILMYTSSQKRTVRSLEHDVGCKFEFISPPAMEEILESSAEQVVATLNRVHPESVKFFTATAQKLVEEQGASALAAALAQMSGFSQPPSCRSLINHEQGWITLQLTRDSDTSGRFFSARSVTGFLSDVYSPAADEVGKIHLIADERIKGAVFDLPEEVARELLKKELPSGNTISKITKLPTLQDDEPASDFYGKFSDRDRSNRRGSNSRDQRGFRSSRGWEGGQDSDDEFGRGSRNFRSGNNRSRMGKNSGDDWLIGGGRSNRFSSSNRSGHGGACFNCGQPGHRAADCRKKRDFF 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1910g00007 452 ProSiteProfiles Zinc finger CCHC-type profile. 432 447 IPR001878 GO:0003676|GO:0008270
Vium1910g00007 452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 186 IPR027417 -
Vium1910g00007 452 SMART c2hcfinal6 431 447 IPR001878 GO:0003676|GO:0008270
Vium1910g00007 452 SUPERFAMILY Retrovirus zinc finger-like domains 413 450 IPR036875 GO:0003676|GO:0008270
Vium1910g00007 452 CDD GUCT_Hera 247 326 - -
Vium1910g00007 452 Pfam Helicase conserved C-terminal domain 46 152 IPR001650 -
Vium1910g00007 452 MobiDBLite consensus disorder prediction 334 440 - -
Vium1910g00007 452 MobiDBLite consensus disorder prediction 416 430 - -
Vium1910g00007 452 FunFam Nucleolar RNA helicase II 40 230 - -
Vium1910g00007 452 Gene3D - 34 239 IPR027417 -
Vium1910g00007 452 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 24 386 - -
Vium1910g00007 452 MobiDBLite consensus disorder prediction 346 390 - -
Vium1910g00007 452 Gene3D - 423 450 - -
Vium1910g00007 452 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 47 192 IPR001650 -
Vium1910g00007 452 SMART helicmild6 72 152 IPR001650 -
Vium1910g00007 452 Pfam GUCT (NUC152) domain 239 339 IPR012562 GO:0003723|GO:0004386|GO:0005524
Vium1910g00007 452 CDD SF2_C_DEAD 44 161 - -
Vium1910g00007 452 Pfam Zinc knuckle 431 447 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1910g00007 Vium-Chr1910 22538 28201 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1910g00007 13 174 Eukaryotic Initiation Factors Gene Family AT3G19760 34.756 2.72e-23 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1910g00007 - - vum:124828335 848.58