Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1904g00003 ATGGCAGAAATTGAAATCCCTCAGTATTTTGTTTGTCCCATTTCGTTTCAGATCATGGAAGATCCTGTGACTACTGTGACAGGGATTACATATGACAGAGAAAGCATAGAAGAGTGGTTGCGCAAGGCCAACGATTGTGTGTGTCCTGTTAGCAAACAACCACTTCCAAGAAGCTCTCAATACTTAACCCCTAACCACACACTTCGGAGGCTTATCCAAGCTTGGTGTTCGGAAAACACTGCCAATGGTGTTGATCGAATTCCAACCCCGAAAACCCCTTTAAGCATGATCCAAGTTCAGAAGCTTCTGAAGGGTCTTGAGGCTCCTCATTCTTTTGGAACATCGTTGGAAAAGTTGCATGCTTTGGCTACACAAAGCCAGAGGAACAGAACCTGCATGGCTGAGGCTGGTGTAGCCAAGGCCATGGTCAAACTGATTAACAACAGTTTCAAAGATGGAAACACAAACGCCAGTTCCGTTGAAGAAGCTTTGAGAATTGTTCATCTGCTTTGGAACAACCACAGCAGCATGAAACCTCTAGTTGGGGAGAGCTTGGACTTCATCAACTCGTTGACTTGGGTTTTGAAGGTTCATTTGGATGACAGCAACAGCAACGTGGTAAACGAAGCAATGCCCCTTTTGAAGTTGACAATCGAGGTTGCTGATTCAACCCTTTTGGGAAATTTAAGCTTTGAATTCTTCAAGGAAATGGTGAGAGTATTGAAGAAAATAGAACTATCTCAGAAAACTATCAAATCTGCTTTGCATGTGCTTGTACAAACCAGCGTTTTGGGTAGAAACAGAACGAGGATTGTTGAGGCGGGTGCAGTGACAGAACTCATAGAGCTTGAGCTTGAGAAGCCAGAGAAGAACATGACAGAGCTCATATTCAACCTTTTGGCTCATCTGTGTTGTTGTGCTGACGGGAGAGAACAGTTTCTTAGACATGCTGCGGGCATTGCAGTTGTTTCAAAGAGGGTTTTAAGGGTTTCTGCTGCCACTGATGAGAGAGCAATTCATGTGTTTTCAGTGATTGCTAAGTTTTCAGCATCAAACGAGGTTGTTCTAGAGATGCTAAGGGTTGGAGCTGTGTCAAAGCTTTGCATGGTGATGCAAGCAGATTGTGGTGCTTATTTGAAAGAGAAAGCAAGAGACATCCTTAGATTGCACTCCAAAGTTTGGAACAATTCTCCTTGTATACAACTGTATTTGTTTACTAGGCACCAAAGGTGA 1233 0.4347 MAEIEIPQYFVCPISFQIMEDPVTTVTGITYDRESIEEWLRKANDCVCPVSKQPLPRSSQYLTPNHTLRRLIQAWCSENTANGVDRIPTPKTPLSMIQVQKLLKGLEAPHSFGTSLEKLHALATQSQRNRTCMAEAGVAKAMVKLINNSFKDGNTNASSVEEALRIVHLLWNNHSSMKPLVGESLDFINSLTWVLKVHLDDSNSNVVNEAMPLLKLTIEVADSTLLGNLSFEFFKEMVRVLKKIELSQKTIKSALHVLVQTSVLGRNRTRIVEAGAVTELIELELEKPEKNMTELIFNLLAHLCCCADGREQFLRHAAGIAVVSKRVLRVSAATDERAIHVFSVIAKFSASNEVVLEMLRVGAVSKLCMVMQADCGAYLKEKARDILRLHSKVWNNSPCIQLYLFTRHQR 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1904g00003 410 SUPERFAMILY ARM repeat 116 377 IPR016024 -
Vium1904g00003 410 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Vium1904g00003 410 Gene3D - 109 393 IPR011989 -
Vium1904g00003 410 PANTHER WDSAM1 PROTEIN 3 401 IPR045185 GO:0061630
Vium1904g00003 410 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Vium1904g00003 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Vium1904g00003 410 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Vium1904g00003 410 SUPERFAMILY RING/U-box 4 85 - -
Vium1904g00003 410 CDD RING-Ubox_PUB 7 58 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1904g00003 Vium-Chr1904 82539 83906 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1904g00003 3 407 U-box Gene Family AT3G11840 41.611 5.17e-105 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1904g00003 - - gmx:100787426 672.544