Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1904g00001 ATGGCGACGTACTTTCATGGTAGCACTTCAGAAATCCCTTCCTCCGCTGAAGGGTTGCAGACACTTTACCTTATGAATCCAAACTACGTACCGTACTCTGACGCGGCGCAACACCAAGCGCAAAACATGCTCCTCGTCAATCCCAATAACGCTAGTAACACTAGCCCCACTTCCGCCAACGCGCTCAACTTGGGTAACTTCTCCCACGCGCCTCCACCGCCATCTCCCAACAACCACCGTGACCAACAACACAACCACCACCACCACCACCACCTGATTGGGCTTACCATTCCCTCGTCAAACATCATCGGATCCAATACCGCCGCCGGAGATCACGCTCGCCCATCGTTCCTTGGACAACATGAATTCTCCGGCTTTCACGGCGGTGCTACTGCGGCAACAACAGCGTCAACTTCTCGTTCTAACTATAACTTATGGGGTTCCATATTCGATCAATCTGCTTCGAATATGGTGACAACAACAAACACCCCATCTGAAAATATAGGGTGTGTTGCTTCCGCTGTCAATCCATCGACCCAGATTGGTTTCCATAGGCCGAATCATTTGTCGCTAAGCCTTTCTTCACAGCAAACACCTTACAGGTCTTTATCCGGGGACGTTCATGCTATATCACCGGCGAGCCTCGGCGGCGATGATATGAGGGGTTTGCAGAGCGGGGTTTCTAACATGCATAGTGTTGTTTTGGGTTCCAAGTATTTGAAATCAACACAGGAGCTTCTTGACGAAGTTGTGAATGTGGGGAGGGGAATCTCGAAAGGGGAGGAATCTATGGAAGGGGCTAAGAAAGAGAAGATGAAGGGGAATATTGAATCAACTTCTGGGGTTGGTGAAGGTTCGAGCTGTGGAGGAGAGAACAATGATGGAGGGAAACAAGGAGGTGAGCTCGGCACGGCACAGAGACAAGAGCTTCAGATGAAGAAATCCAAGCTTGTGAGCATGCTCGATGAGGTGGAGCAAAGGTACCGACAGTATCACCACCAAATGCAAATTGTGGTAACATCATTTGAACAGGCTGCGGGTGTTGGAGCGGCAAAGTCTTATACATCCCTTGCGTTAAGGACAATCTCAAAGCAATTTCGGTGTCTGAAAGATGCTATCTCTTCGCAAATCAAGACAGCCAGCAAGACCTTGGGTGAAGATGATTGCTTAGGAGTTAATGTAGAAGGTTCAAGACTTAGGTATGTTGATCATCAACTGAGACAACAACGTGCGCTGCAGCAACTAGGAATGATCCAACACAATGCTTGGAGGCCCCAAAGAGGCTTGCCTGAACGTGCTGTTTCTGTTCTTCGTGCTTGGCTTTTTGAGCATTTCCTGCACCCCTATCCTAAGGACTCCGACAAGGTTATGCTTGCGAAACAAACAGGACTTACTCGGAGCCAGGTATCTAACTGGTTTATAAATGCTCGAGTTCGGCTATGGAAGCCAATGGTTGAAGAAATGTACTTGGAAGAGGTGAAGCAAGAACCGAACAATGGCTCCCAAGACAATACCACAAATAGATCAAAAGAAAACAACAAGGAATTATGGTCAGAAGCTAATGCTGCTACACAAGAATCTGGTGGCATGAGACTTAATCCAATCAATGTTCTCCGATCAAAGGCAGAAAGTTTCAACAATAACCAGACCACTTCCCCAACAGAGATCTCCAATTCTAATTCACTCTCAACATCTCCAATGGGAGGTGGAGGAGGAGAAGGAGGAGGAGGAAGAGGGTCTCTCCAATCTGGTTTCCATCTTGGGGACATGCAAAGTCCAAACAAACCAAGAAGCACTTCTGAAATGCAAAACTCTCCTGGTAGTATCCTTTCAGTGGACATGGAAATGAAGCCTCATCATGGAGAGACAAACACCAGAGAAGGAACCAACACAAAGTTTGGCATTGAAAACCATGGAGGGGGTTTTGGAGCATTTCCCATGGAAGATATTGGAAGGTTCCATCATGTCACTGAACAGCTGGCTCCAAGGTTTCATGGAAACGGAGTTTCTCTCACTCTTGGACTTCCACACAGTGAGAATCTTACCCTCTCGGGAACTCAGCATGGATTCCTCTCTCCGAATATGCACCTGGGAATGAGAACGACCAATGAAAATGAGTTCTGTGGTGCCATCAACACGCCACCTTCTTCTCATTCAGGCACCAGTTATGATAACATCGACATCCAAAACAGAAAGAGGTTCGCTGCGCAGTTGTTGCGGGATTTCGTGGCCTGA 2235 0.4765 MATYFHGSTSEIPSSAEGLQTLYLMNPNYVPYSDAAQHQAQNMLLVNPNNASNTSPTSANALNLGNFSHAPPPPSPNNHRDQQHNHHHHHHLIGLTIPSSNIIGSNTAAGDHARPSFLGQHEFSGFHGGATAATTASTSRSNYNLWGSIFDQSASNMVTTTNTPSENIGCVASAVNPSTQIGFHRPNHLSLSLSSQQTPYRSLSGDVHAISPASLGGDDMRGLQSGVSNMHSVVLGSKYLKSTQELLDEVVNVGRGISKGEESMEGAKKEKMKGNIESTSGVGEGSSCGGENNDGGKQGGELGTAQRQELQMKKSKLVSMLDEVEQRYRQYHHQMQIVVTSFEQAAGVGAAKSYTSLALRTISKQFRCLKDAISSQIKTASKTLGEDDCLGVNVEGSRLRYVDHQLRQQRALQQLGMIQHNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEVKQEPNNGSQDNTTNRSKENNKELWSEANAATQESGGMRLNPINVLRSKAESFNNNQTTSPTEISNSNSLSTSPMGGGGGEGGGGRGSLQSGFHLGDMQSPNKPRSTSEMQNSPGSILSVDMEMKPHHGETNTREGTNTKFGIENHGGGFGAFPMEDIGRFHHVTEQLAPRFHGNGVSLTLGLPHSENLTLSGTQHGFLSPNMHLGMRTTNENEFCGAINTPPSSHSGTSYDNIDIQNRKRFAAQLLRDFVA 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1904g00001 744 MobiDBLite consensus disorder prediction 47 89 - -
Vium1904g00001 744 Pfam Homeobox KN domain 440 479 IPR008422 GO:0003677|GO:0006355
Vium1904g00001 744 SMART prehox3 228 375 IPR006563 -
Vium1904g00001 744 MobiDBLite consensus disorder prediction 261 301 - -
Vium1904g00001 744 SUPERFAMILY Homeodomain-like 424 489 IPR009057 -
Vium1904g00001 744 ProSiteProfiles 'Homeobox' domain profile. 420 483 IPR001356 GO:0003677
Vium1904g00001 744 MobiDBLite consensus disorder prediction 546 640 - -
Vium1904g00001 744 FunFam BEL1-like homeodomain protein 9 426 488 - -
Vium1904g00001 744 CDD homeodomain 423 484 IPR001356 GO:0003677
Vium1904g00001 744 MobiDBLite consensus disorder prediction 492 514 - -
Vium1904g00001 744 Coils Coil 307 327 - -
Vium1904g00001 744 MobiDBLite consensus disorder prediction 585 610 - -
Vium1904g00001 744 MobiDBLite consensus disorder prediction 261 275 - -
Vium1904g00001 744 Gene3D - 426 505 - -
Vium1904g00001 744 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 77 507 - -
Vium1904g00001 744 MobiDBLite consensus disorder prediction 546 567 - -
Vium1904g00001 744 MobiDBLite consensus disorder prediction 47 65 - -
Vium1904g00001 744 Pfam Associated with HOX 233 374 IPR006563 -
Vium1904g00001 744 MobiDBLite consensus disorder prediction 279 293 - -
Vium1904g00001 744 SMART HOX_1 423 487 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1904g00001 Vium-Chr1904 42128 47059 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1904g00001 1 744 Homeobox Transcription Factor Family AT2G35940 42.152 1.51e-127 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vium1904g00001 POX 7e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1904g00001 - - gmx:100786883 1115.52