Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1902g00031 ATGAGCAGGATGGAGTCTCAGGTGAAGCATGCTCTTGTTGTTAAAGTTATGGGTCGTACTGGATCCAGAGGGCAGGTTACGCAGGTTAGAGTGAAGTTTTTGGATGATCAGAATCGTCACATCATGAGGAATGTGAAAGGACCTGTGAGAGAAGGAGACATTCTCACCCTACTCGAATCTGAGAGGGAAGCAAGAAGATTGCGCTAG 207 0.4686 MSRMESQVKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREARRLR 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1902g00031 68 FunFam 40S ribosomal protein S28 1 68 - -
Vium1902g00031 68 Pfam Ribosomal protein S28e 7 67 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vium1902g00031 68 CDD S1_S28E 9 68 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vium1902g00031 68 SUPERFAMILY Nucleic acid-binding proteins 4 68 IPR012340 -
Vium1902g00031 68 PANTHER 40S RIBOSOMAL PROTEIN S28 4 68 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vium1902g00031 68 Hamap 30S ribosomal protein S28e [rps28e]. 1 68 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vium1902g00031 68 Gene3D - 1 68 IPR012340 -
Vium1902g00031 68 ProSitePatterns Ribosomal protein S28e signature. 59 67 IPR028626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1902g00031 Vium-Chr1902 208594 209046 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1902g00031 4 68 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 87.692 1.29e-35 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1902g00031 K02979 - gmx:100811085 103.99