Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1902g00014 ATGGAAAATGCAATTTCATCCAGCTTGGCGAGAACGAAATCGGAGGATATGGAGGAGACGGGGGCAACGACAAGTATGAAATCGCCCCCGTCAGCGGAGGGTGGCGGAGTGCTGTCGAGGAAATCGAGCAAGAGGATGACAGCGGCCTCGCCGAGTGGGGGCGGAGGAAGAAGCACACACATAAGGAGGGCGAGGAGCGCTCAGTTGAAGGTGGATGTGGATGAGGTTGGCAGCGGCGTGGCTCTGAGTCGAGCTTCTAGCGCTAGCTTGGGCCTCTCGTTCTCCTTCACTGGCTTCACTCTCCCTCCCGATGAAATCGCCGATTCAAAACCTTTCAGCGACGAAGATATCCCGGAGGATATTGAAGCCGGAACTCATAAGCCTAAGTTCCAGACAGAACATACTCTGCCAATATATCTGAAGTTCACCGACGTGACCTACAAGGTAGTGATTAAAGGCATAACTAGAACTAAGGAAAAGGATATCTTGAAGGGGATCACTGGTTCTGTTAATCCTGGGGAAGTTTTGGCATTAATGGGTCCTTCAGGAAGTGGAAAGACATCTTTGTTAAATCTGCTAGGAGGAAGGTTAATTCAGTCCACAATTGGTGGCTCTATCACTTACAATGACCAACCTTATTCCAAGTTTCTAAAGAGCAGGATTGGATTCGTGACACAGGACGATGTTCTGTTTCCTCACCTTACTGTTAGAGAAACATTGACGTATGCTGCTCGCTTAAGATTGCCAAATATACTAACGAAAGAGCAAAAGGAAAAACGAGCTTTGGATGTCATCGAAGAGCTGGGATTAGAGAGGTGCCAAGATACTATGATAGGAGGTTCCTATGTTCGAGGAGTATCTGGTGGAGAGAGGAAGAGGGTTTGTATTGGCAGTGAGATCATAATCAACCCTTCTCTTCTATTTCTTGACGAACCAACTTCTGGTTAGGATTCTACGACAGCTTTAAGGATAGTTCAATTGCTACATGACATAGCAGAGGCAGGAAAAACCGTAGTGATAACAATCCATCAACCATCTAGCAGACTCTTCCATAAATTTGATAAATTGATCCTTCTAGGAAAAGGGAGTTTGCTTTACTTTGGAAAAGCATCTGAAGCAATGGACTATTTTCAGTTTATAGGGTGTGCACCCCTTATTACCATGAACCCAGCTGAGTTTTTATTAGACCTTGCAAATGGAAACGTGAATGATATTTCTGTACCATCAGAGTTAAAGGATAGAGTGCAGGTAGGAAATGCTGAAGTTGAAACATGCAATGACAAACCATCTGCTTCAGTTGTACAAGAGTATCTGGAAGAGGCATATGATTCTCGAGTGGCAGAAATAGAGAAGACAAAGTTAATGGTTCCTGTCCCTCTCGATGAAGAACTGAAGTCTAAAATCTATTCTTGTAAAAGACAGTGGGGGGCAAGTTGGTTTGAGCAATTTTCTATACTGTTTTCAAGAGGATTCAAAGAGAGGAAGCATGACTATTTTAGCTGGTTGAGAATTACCCAAGTTCTTTCCACTGCAGTCATCTTAGGATTACTTTGGTGGCAATCAGATGCTAACAACCCAAAAGGTTTGCAAGATCAGGCAGGACTTCTCTTCTTTATTGCTGTGTTTTGGGGATTTTTTCCTGTCTTTACTGCCATATTCACATTTCCTCAAGAGAGGGCCATGCTGACTAAGGAACGAACAACGGATATGTACAGACTAAGTGCATATTTTGTGGCTAGAACTACAAGTGACCTTCTACTGGACCTGGTGTTACCAGTCTTTTTCCTCCTTGTTGTTTATTTCATGGCCAGTTTGAGACTCAGTGCAGGGCGTTTTTTTCTTAGTATTCTTACGGTTTTTCTCTGCATCATAGCAGCTCAGGGACTTGGGCTTGCAATCGGGGCTACACTAATGGATTTGAAAAGGGCAACAACTTTGGCTTCAGTAACCGTGATGACTTTCATGCTGGCTGGAGGATTTTTTGTGCAGAAAGTCCCCATATTCATATCTTGGATTCGCTACCTCTCCTTCAACTACCATACGTATAAACTTCTGCTTAAGGTTCAATATGAACACATTACACGGACCATAAATGGAATCACACTTGACAGTGGATTCACAGAGGTTGCTGCTCTGCTAGCTATGGTTTTTGGTTACCGTCTTTTGGCATATCTCTCCTTGCGGCGGATGAAACTTCAAGCTGGAAATTAA 2211 0.4383 MENAISSSLARTKSEDMEETGATTSMKSPPSAEGGGVLSRKSSKRMTAASPSGGGGRSTHIRRARSAQLKVDVDEVGSGVALSRASSASLGLSFSFTGFTLPPDEIADSKPFSDEDIPEDIEAGTHKPKFQTEHTLPIYLKFTDVTYKVVIKGITRTKEKDILKGITGSVNPGEVLALMGPSGSGKTSLLNLLGGRLIQSTIGGSITYNDQPYSKFLKSRIGFVTQDDVLFPHLTVRETLTYAARLRLPNILTKEQKEKRALDVIEELGLERCQDTMIGGSYVRGVSGGERKRVCIGSEIIINPSLLFLDEPTSGXDSTTALRIVQLLHDIAEAGKTVVITIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMDYFQFIGCAPLITMNPAEFLLDLANGNVNDISVPSELKDRVQVGNAEVETCNDKPSASVVQEYLEEAYDSRVAEIEKTKLMVPVPLDEELKSKIYSCKRQWGASWFEQFSILFSRGFKERKHDYFSWLRITQVLSTAVILGLLWWQSDANNPKGLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLTKERTTDMYRLSAYFVARTTSDLLLDLVLPVFFLLVVYFMASLRLSAGRFFLSILTVFLCIIAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVQKVPIFISWIRYLSFNYHTYKLLLKVQYEHITRTINGITLDSGFTEVAALLAMVFGYRLLAYLSLRRMKLQAGN 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1902g00014 736 Pfam ABC-2 type transporter 481 690 IPR013525 GO:0016020|GO:0140359
Vium1902g00014 736 CDD ABCG_EPDR 137 368 - -
Vium1902g00014 736 ProSitePatterns ABC transporters family signature. 286 300 IPR017871 GO:0005524|GO:0016887
Vium1902g00014 736 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 380 IPR027417 -
Vium1902g00014 736 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 140 386 IPR003439 GO:0005524
Vium1902g00014 736 Gene3D - 139 380 IPR027417 -
Vium1902g00014 736 SMART AAA_5 172 363 IPR003593 GO:0016887
Vium1902g00014 736 MobiDBLite consensus disorder prediction 1 66 - -
Vium1902g00014 736 Pfam ABC transporter 163 314 IPR003439 GO:0005524
Vium1902g00014 736 FunFam ABC transporter G family member 22 150 380 - -
Vium1902g00014 736 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 119 724 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1902g00014 Vium-Chr1902 75426 83279 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1902g00014 162 415 Calmodulin-binding Proteins AT2G36910 27.308 6.03e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1902g00014 K05681 - gmx:100796008 1282.7