Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1902g00002 ATGGGAAACAATTGTGTCGGGTCAAAAATCTCGGATTATACACTGTTTTGCTGTGTTTTTTCCAGTTCATTGGTGTGGCCTCATCATCATCATCATCAAACGGTGGTCACAGAAATTTCTGATCCAACTTCACTTGTGACTAAAACTAAAGACACAAATACTCCAGAGAATGTTCAGGAAAAGCCTCCACGAGTGGTGAAAATTAACAAAGAGATTATTAACATGCCTTCGGAGCCTGCAATTAAAAAAATACCCCGTAAAGTCAAGAGGGTAGCAATAGGGCTTCGAGAAGAATCAATTTTGAAGAGAAAAAGTGGTCACTTTAAGGAGTACTATAATTTGGGAGAAGAGCTTGGAAAGGGACAATATGGAACAACATTCCTGTGTACTGAGAAAGCAACTGGGAAAAAGTATGCTTGCAAGTCCATTCCAAAAGTGAAACTGCTGATAGATGAAGACGTGGAAGATGTGAGGAGGGAGATTGAGATAATGCATCACTTGGAGGGGTGTCCCAATGTGATATCGATTAAAGGGGCTTTTGAGGATGGTGTTGCAGTTCATGTTGTGATGGAGTTATGTGAAGGGGGTGAACTTTTTGATAGGATTGTGGAAAGGGGGCATTACACAGAGAGAAAAGCAGCTGAACTTGCAAGGACTATAGTTACTATTATAGAAGGTTGCCACTCCCTCGGGGTGATGCATCGTGATCTTAAACCTGAGAATTTTCTTTTTGTTGATGGGAATGAAGAGTCCACACTTAAAGCCATAGATTTTGGAATGTCTGTTTTCTTCAAACCAGAGGAAACTTTTAGGGAGGTGGTTGGAAGTCCTTATTATATCGCACCTGAAGTTCTACGAAGGCATTATGGTCCAGAAGCTGATGTGTGGAGTGCAGGTGTAATCATATACATTCTTTTATGTGGAAAACCTCCATTTTGGGGTGAATCTGAGCAAGAGATATTTGAAGAAGTTTTGCATGGTGATCTTGATTTTACTTCAGATCCTTGGCCGAATATCTCTGGAAGTGCTAGAGACTTGGTCAGGAAGATGCTTGTTAGAGATCCTAGAAAACGGATAACAGCACATGAAGTTCTTCGTCACCCTTGGATTCAAGTCGATGGAGTTGCTCCGGACAAGCTTCTTGATTCTGCGGTTTTGAGTCGCCTGAAGCAGTTTTCTGTAATGAACAAGCTAAAGAAAATGGCTCTTAGAGTTATTGCAGAGAACCTCTCAGAAGAAGAAATTTCTGAACTGAAAGTAGCGTTTAAGATGATAGACACAGACAACAGTGGTCAAATTACTTTAGAAAAGCTCAAGGCTGGATTAAAAATGCTTGGTAATAATCTCAGTGAACCAGAAATTTTGGACCTAATGCAAGCTGCAGATGTTGATAACAGTGGCACAATTGACTATAGAGAATTCATAGCTGCAACATTGCATTTAAACAAAGTTCACAGAGAAGATCATTTAGTTGCAGCTTTTTCATTTTTTGATAGAAGTGGAAGCGGCTACATCACTCAAGATGAGCTTCAAAAAGCCTGTGAAGAATTTGGTATTGAGAATGTATGCTTTGAGGAAATGATCCAAGAAGCTGATCAGAATAACGATGGCCGAATAGACTACGATGAATTCGTGGCTATGATGCTGAAAGGCAATGCAGATTTAGGTATAAACAGGATAAAGGGTGGCACTGATTTTAGCATTGGATTTAGGGAGGCACTATCAGTGTGTTGA 1734 0.402 MGNNCVGSKISDYTLFCCVFSSSLVWPHHHHHQTVVTEISDPTSLVTKTKDTNTPENVQEKPPRVVKINKEIINMPSEPAIKKIPRKVKRVAIGLREESILKRKSGHFKEYYNLGEELGKGQYGTTFLCTEKATGKKYACKSIPKVKLLIDEDVEDVRREIEIMHHLEGCPNVISIKGAFEDGVAVHVVMELCEGGELFDRIVERGHYTERKAAELARTIVTIIEGCHSLGVMHRDLKPENFLFVDGNEESTLKAIDFGMSVFFKPEETFREVVGSPYYIAPEVLRRHYGPEADVWSAGVIIYILLCGKPPFWGESEQEIFEEVLHGDLDFTSDPWPNISGSARDLVRKMLVRDPRKRITAHEVLRHPWIQVDGVAPDKLLDSAVLSRLKQFSVMNKLKKMALRVIAENLSEEEISELKVAFKMIDTDNSGQITLEKLKAGLKMLGNNLSEPEILDLMQAADVDNSGTIDYREFIAATLHLNKVHREDHLVAAFSFFDRSGSGYITQDELQKACEEFGIENVCFEEMIQEADQNNDGRIDYDEFVAMMLKGNADLGINRIKGGTDFSIGFREALSVC 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1902g00002 577 SUPERFAMILY EF-hand 399 550 IPR011992 -
Vium1902g00002 577 SMART efh_1 417 445 IPR002048 GO:0005509
Vium1902g00002 577 SMART efh_1 453 481 IPR002048 GO:0005509
Vium1902g00002 577 SMART efh_1 489 517 IPR002048 GO:0005509
Vium1902g00002 577 SMART efh_1 523 551 IPR002048 GO:0005509
Vium1902g00002 577 Pfam Protein kinase domain 112 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1902g00002 577 Gene3D Phosphorylase Kinase; domain 1 91 187 - -
Vium1902g00002 577 ProSiteProfiles EF-hand calcium-binding domain profile. 485 520 IPR002048 GO:0005509
Vium1902g00002 577 SMART serkin_6 112 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1902g00002 577 Pfam EF-hand domain pair 417 478 IPR002048 GO:0005509
Vium1902g00002 577 Pfam EF-hand domain pair 490 548 IPR002048 GO:0005509
Vium1902g00002 577 PANTHER SERINE/THREONINE-PROTEIN KINASE 101 544 - -
Vium1902g00002 577 FunFam Calcium-dependent protein kinase 1 114 197 - -
Vium1902g00002 577 ProSitePatterns EF-hand calcium-binding domain. 532 544 IPR018247 -
Vium1902g00002 577 ProSitePatterns EF-hand calcium-binding domain. 498 510 IPR018247 -
Vium1902g00002 577 SUPERFAMILY Protein kinase-like (PK-like) 110 371 IPR011009 -
Vium1902g00002 577 Gene3D - 383 552 - -
Vium1902g00002 577 ProSiteProfiles EF-hand calcium-binding domain profile. 524 554 IPR002048 GO:0005509
Vium1902g00002 577 Gene3D Transferase(Phosphotransferase) domain 1 188 382 - -
Vium1902g00002 577 CDD STKc_CAMK 112 369 - -
Vium1902g00002 577 FunFam Calcium-dependent protein kinase 1 378 552 - -
Vium1902g00002 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Vium1902g00002 577 FunFam Calcium-dependent protein kinase SK5 198 382 - -
Vium1902g00002 577 ProSiteProfiles EF-hand calcium-binding domain profile. 413 448 IPR002048 GO:0005509
Vium1902g00002 577 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
Vium1902g00002 577 ProSitePatterns EF-hand calcium-binding domain. 462 474 IPR018247 -
Vium1902g00002 577 ProSiteProfiles Protein kinase domain profile. 112 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1902g00002 577 ProSiteProfiles EF-hand calcium-binding domain profile. 449 484 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1902g00002 Vium-Chr1902 4376 8548 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1902g00002 51 577 EF-hand Containing Proteins AT3G10660 69.318 0.0 766
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium1902g00002 Pkinase 1.6e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1902g00002 K13412 - gmx:100814475 965.681