Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium189g00001 ATGTGCAATTGTGGCTCTTGTGGATCGAGGAAGCAAACACTTAGTGAATGGGAAAAACATACAGGTTGCAGAGCGAAAAAATGGAAACATAGTGTGAAAGTGAAAAGTACAATGCTACCTCTGGAAAAATGGTTGGCTGAACACATTCCACTAGAGGGAGTATCCCAGCAGTTAGATCAGCAGCAGGTACTTGCTTTTTTGCAAGAGAAGTATGAGCCTGTTAATGCAAAATGGACAACAAAAAGATGTGCTGTTTGCAGATGGGTTGAAGATTTGGAAGATAACAAAATTATTATCTGTAACAGATGCCAAATAGCAGTCCACCAAGAGTGCTATGGGGCAAAAAATGTTCAGGATTTAACTTCTTGGGTTTGTAGAGTATGTGAAACTCCCGATGTTGAGAGAGAGTGTTGCCTCTGA 420 0.4071 MCNCGSCGSRKQTLSEWEKHTGCRAKKWKHSVKVKSTMLPLEKWLAEHIPLEGVSQQLDQQQVLAFLQEKYEPVNAKWTTKRCAVCRWVEDLEDNKIIICNRCQIAVHQECYGAKNVQDLTSWVCRVCETPDVERECCL 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium189g00001 139 SUPERFAMILY FYVE/PHD zinc finger 53 129 IPR011011 -
Vium189g00001 139 ProSiteProfiles Zinc finger PHD-type profile. 80 131 IPR019787 -
Vium189g00001 139 ProSitePatterns Zinc finger PHD-type signature. 83 128 IPR019786 -
Vium189g00001 139 SMART PHD_3 82 129 IPR001965 -
Vium189g00001 139 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 132 IPR013083 -
Vium189g00001 139 PANTHER PHD FINGER PROTEINS 29 139 - -
Vium189g00001 139 Pfam PHD-finger 95 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium189g00001 Vium-Chr189 7798 9268 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium189g00001 PHD_2 3.4e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium189g00001 - - vum:124827854 305.449