Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1899g00003 ATGGAACCCAATGCATTAGGGGGTGGAATATTTCCTAACATAAGTAGCGGTTTGTTAGGAGTAGAAAACCTTCAAAACCAGCAAAACCCTCCACACTCTTTGCACCACCCCCAAATGGTTTCCTATGCTTCGCACCATGACACTGACACACATCAGCAACACCCACCACAATCAATCAAACATGGCTACAACTATTCCGTGGGTAAAACCAACAAGTTACAAATCACACTCAGTGATGAAGATGAGCCTGGGTTCACAGCAGAAGACTCCGGTGATCCCAAGAGAAAAATGTCTCCATGGCATAGAATGAAGTGGACTGACACCATGGTAAGACTCTTAATAATGGCTGTTTATTACATTGGAGACGAGGCTGGTTCAGAAGGCGCTGATCCCACCAAGAAGAAAGTCACGGGTTTGCTGCAGAAGAAAGGGAAATGGAAATCGGTGTCAAGGGGCATGATGGAAAAGGGGTACTATGTATCTCCCCAACAATGCGAAGACAAATTCAATGACTTGAATAAGAGGTACAAGAGGGTCAACGACATTCTGGGCAAGGGCACAGCTTGTCGGGTGGTGGAGAACCAAACATTGTTGGACACCATGGATCTGTCCCCAAAAATGAAGGAGGAAGTTCGAAAACTGCTCAACTCCAAGCACTTGTTCTTCAGGGAAATGTGTACCTATCACAACAGTTGTGGCCACAACAACAACTGTGGCACTTCGAACGTGCAACAATCAAGTGAGGCTCAACCACAACATCAACATCAACATCAACAGCAGCGGTGTTTGCATTCATCGGAGAACGGGGTGGGGGGTCTGAGAATGTTGAAAGAGGATGAGGAGGAGGATAATGAGGAAGAGGATTCGGAGGATTTTTCTGATGAGGAGGAAGAGGAATCGGGAGAAGGAGCATCAAGGGGTATGGAGGAGGATGAGAATGATGTGATGAGGAAGAGAGCGAGGAAAGGAGGGTTTGGTGGGTTGTCATCATCATCATCGATATCATCTCAGGCGATGATGCAGCAATTGAATGGCGAAGTGAGCGGTGTGTTGCAAGATGTGGGGAAGAGTGCATGGGAGAAAAAACATTGGATGAAGAAGAGGGTGGTGCAGTTGGAGGAGCAGCAGGTGAGTTATCAAATGCAGGCGTTTGAATTGGAAAAGCAACGGTTGAAGTGGGCCAGGTTTAGCAGCAAGAAGGAGAGGGAAATGGAGAGAGATAAGCTTCAGAATCAACGGAGGAGGCTGGAAATAGAGAGAATGGTCTTGCTAATTCGCCAGAAGGAGCTTGAATTGGTTAATGTTCATCAACAGCAGCAGCATCAACAGCAGCATTCTTCTACCTAG 1347 0.4677 MEPNALGGGIFPNISSGLLGVENLQNQQNPPHSLHHPQMVSYASHHDTDTHQQHPPQSIKHGYNYSVGKTNKLQITLSDEDEPGFTAEDSGDPKRKMSPWHRMKWTDTMVRLLIMAVYYIGDEAGSEGADPTKKKVTGLLQKKGKWKSVSRGMMEKGYYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQTLLDTMDLSPKMKEEVRKLLNSKHLFFREMCTYHNSCGHNNNCGTSNVQQSSEAQPQHQHQHQQQRCLHSSENGVGGLRMLKEDEEEDNEEEDSEDFSDEEEEESGEGASRGMEEDENDVMRKRARKGGFGGLSSSSSISSQAMMQQLNGEVSGVLQDVGKSAWEKKHWMKKRVVQLEEQQVSYQMQAFELEKQRLKWARFSSKKEREMERDKLQNQRRRLEIERMVLLIRQKELELVNVHQQQQHQQQHSST 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1899g00003 448 PANTHER F16F4.11 PROTEIN-RELATED 1 435 - -
Vium1899g00003 448 Coils Coil 369 389 - -
Vium1899g00003 448 Pfam Myb/SANT-like DNA-binding domain 102 226 IPR044822 -
Vium1899g00003 448 Gene3D - 105 178 - -
Vium1899g00003 448 MobiDBLite consensus disorder prediction 279 305 - -
Vium1899g00003 448 Coils Coil 399 426 - -
Vium1899g00003 448 MobiDBLite consensus disorder prediction 78 97 - -
Vium1899g00003 448 MobiDBLite consensus disorder prediction 241 314 - -
Vium1899g00003 448 MobiDBLite consensus disorder prediction 241 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1899g00003 Vium-Chr1899 20824 22742 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium1899g00003 Myb_DNA-bind_4 1.3e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1899g00003 - - gmx:100808934 669.463