Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1888g00004 ATGGAGCGAAGATCACATTCCACTGAAAGAGAAGAGGAATATGATTTGTTCCCAATATACTCCGAAAGGTCACAGCAAGACATGACAGCCATGGTCTCTGCGCTCACACAAGTCATAGGTGGTTCCAACAATGATTCTCTTCACCCCCATGAAGACCTTTTTACTTCTTCCAACAACACCTCATCCCAGAATAATAATGAACAATCACAAGTGCCACAACAAGATCAAGGGAGTGGAAGAAGAAGACACTATAGAGGAGTGAGGCAGCGTCCATGGGGGAAATGGGCTGCAGAGATTCGTGATCCGAAGAAGGCAGCGAGGGTATGGCTTGGAACTTTCGAAACTGCAGAAGCTGCGGCTCTTGCTTACGATGAAGCTGCTCTCAGATTCAAAGGAAGCAAAGCAAAGCTCAATTTCCCTGAGAGGGTTCAAGGCACTGCCGAATTTGGTTACCTCACAAATCAGCACATCTCATCAACAACAGCTGCCGGTGGCCAAACTTCAAACCCTGTTACTCCACACTTCGCTCAAGAAACCTATTCACCAACTCACTATCACTATCCACAACAAATCATGGGTGCAGCTGGAACTAACTTCAATAACCAAGACACGCTCGGTTTCTATGGGGGAGACATGTTTGTTTCTTCTTCGTCTTCTTCCTCTTCCTCAGCTCTCTCTCAACAGCAACAACAGTTTCTGACATTTTCGACGCAGTTTGGAGGTTCTTCTTCTGACCCTCCTGTGAATTGGAGGGGTGATGGATATTGA 768 0.4635 MERRSHSTEREEEYDLFPIYSERSQQDMTAMVSALTQVIGGSNNDSLHPHEDLFTSSNNTSSQNNNEQSQVPQQDQGSGRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEAAALAYDEAALRFKGSKAKLNFPERVQGTAEFGYLTNQHISSTTAAGGQTSNPVTPHFAQETYSPTHYHYPQQIMGAAGTNFNNQDTLGFYGGDMFVSSSSSSSSSALSQQQQQFLTFSTQFGGSSSDPPVNWRGDGY 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1888g00004 255 SMART rav1_2 83 146 IPR001471 GO:0003700|GO:0006355
Vium1888g00004 255 Pfam AP2 domain 83 132 IPR001471 GO:0003700|GO:0006355
Vium1888g00004 255 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Vium1888g00004 255 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Vium1888g00004 255 PANTHER DNA-BINDING DOMAIN 49 223 IPR044808 GO:0003700|GO:0009873
Vium1888g00004 255 MobiDBLite consensus disorder prediction 40 77 - -
Vium1888g00004 255 MobiDBLite consensus disorder prediction 1 21 - -
Vium1888g00004 255 FunFam Ethylene-responsive transcription factor 2 82 141 - -
Vium1888g00004 255 MobiDBLite consensus disorder prediction 236 255 - -
Vium1888g00004 255 MobiDBLite consensus disorder prediction 40 89 - -
Vium1888g00004 255 MobiDBLite consensus disorder prediction 1 18 - -
Vium1888g00004 255 Gene3D AP2/ERF domain 82 142 IPR036955 GO:0003700|GO:0006355
Vium1888g00004 255 ProSiteProfiles AP2/ERF domain profile. 83 140 IPR001471 GO:0003700|GO:0006355
Vium1888g00004 255 CDD AP2 83 141 IPR001471 GO:0003700|GO:0006355
Vium1888g00004 255 SUPERFAMILY DNA-binding domain 83 141 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1888g00004 Vium-Chr1888 85791 88214 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1888g00004 15 157 AP2-EREBP Transcription Factor Family AT5G61890 64.626 3.13e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium1888g00004 AP2 3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1888g00004 - - gmx:100799190 310.457