Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1881g00002 ATGGAAGAGATAAACAATGATGCTGAGAAACTTGATGAAGTTATGCTACCTGGGTTCAGGTTTCATCCAACTGATGAGGAGCTTGTAGGGTTTTACCTCAAGAGGAAGATCCAGCAACGCCCTTTCACTATTGAGCTCATCAAACAGCTTGATATCTATAAATATGACCCTTGGGATCTTCCAAAGTTGGCGACCACAGGAGAGAAAGAGTGGTACTTCTATTGTCCCAGGGATAGAAAATACAGAAACAGTGCAAGGCCAAATAGGGTAACTGGAGCTGGGTTCTGGAAAGCTACAGGGACTGATAGGCCAATCTACTCCTCAGAAGGTTCCAAGTGCATTGGCCTGAAGAAATCTCTGGTTTTTTACAAGGGTAGAGCTGCCAAAGGAGTTAAAACTGATTGGATGATGCATGAGTTCAGGCTACCTTCTCTCACAGACTCACTGTCCCCAAAGTACATAGACAAGAACATTCCTGCTAATGAATCATGGGCTATTTGCAGGATATTCAAGAAAACCAATTCTACAGCTCAAAGAGCTTTATCTCAGTCTTGGGTTTCTTCCCTCCCTGAAACAAGAACCTCTGATCATATCCAAACCAAAGAACAAAACAGCACGCAGTTTTGTTCAGACATATCGTTTACAAAGAAAACTACCTTAGCCAGTCATTACTGTACTAACAATTACAATGACGCACAACCTTTGACCCCTAATAGTAGTACCACACTTTGTCCCTTAGATGTTGCCTCGTACAAATCCATCATCAACCCATTGCTTTACAAAGCCTTTGATCATTTTCCCATTTCAAATGGAGACCTAAGCACGAGCTTTCTGTTCTCATCTCCTTTTGAAACGTCATCAGATGGTAATACTAATGCTAACGTTTCTTCCATGTTGTTGAACATGTCATCCTCCGTGGTTGGAGATTTCAACAAGACTTCAGAGGATAATACAAATGCAACTGCAAGCTTTGGTGGGTTGCAAGAGCATGGCTACCCACTACCATTTCTACGTGAGATGCAAAGCACATTTGGTGAACAACAATATGATAATATTAATGCATTGGTAAAGGGTCCTAATGTGAATATGCCTCGTGTTGATGACCAAGAGTTGGAAACAGTACGATCCATTGGGTTTCCATTCAATATTGGCGATGCATGGAAGTCAAATCTGCTTTGGGATACTTCCTCTTTTCCTTGTGATCTGTCATCTACTTATTCCACGACTAAGTGCTATACTTAG 1242 0.4155 MEEINNDAEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRPFTIELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLTDSLSPKYIDKNIPANESWAICRIFKKTNSTAQRALSQSWVSSLPETRTSDHIQTKEQNSTQFCSDISFTKKTTLASHYCTNNYNDAQPLTPNSSTTLCPLDVASYKSIINPLLYKAFDHFPISNGDLSTSFLFSSPFETSSDGNTNANVSSMLLNMSSSVVGDFNKTSEDNTNATASFGGLQEHGYPLPFLREMQSTFGEQQYDNINALVKGPNVNMPRVDDQELETVRSIGFPFNIGDAWKSNLLWDTSSFPCDLSSTYSTTKCYT 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1881g00002 413 FunFam NAC domain-containing protein 35 24 175 - -
Vium1881g00002 413 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 234 - -
Vium1881g00002 413 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Vium1881g00002 413 Gene3D NAC domain 24 177 IPR036093 GO:0003677|GO:0006355
Vium1881g00002 413 ProSiteProfiles NAC domain profile. 15 172 IPR003441 GO:0003677|GO:0006355
Vium1881g00002 413 SUPERFAMILY NAC domain 14 172 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1881g00002 Vium-Chr1881 26853 28555 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1881g00002 1 258 NAC Transcription Factor Family AT1G26870 63.235 3.50e-111 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium1881g00002 NAM 1.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1881g00002 - - gmx:100783995 678.322