Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1876g00010 ATGTCGTACTCACGGAGGTCAAGGTATTCTCCTTCGCCTTCTCCTTTACCATATAAGCGATATGGTAGGTCTGTGTCCAGGTCCCTCTCAAGGTCCATGTCCAGAAGCCGTTCAAGGAGTGTATCAAGGGATGCAGAAAATCCAGGAAACAATCTGTATGTGACAGGATTGTCTCCTAGGATCACCAAGAGGGAACTGGAAAAGCATTTTGCTGCCGAGGGGAAAGTGATAGATGTACATTTGGTGGTTGATCCTTGGACAAGGGAATCCCGTGGGTTTGGTTTTGTGACAATGGAGAGTGTTGAGGAGGCCGATCGATGTGTAAAGTATTTGAATCGCTCTGTACTTGAAGGGCGTGTTATTACAGTTGAGAAGTTTCTGTGGCAGCAGGTTAGCTGTGTGAAGCAGCTCTTCATCAAACTCTCAAATCACAACTAA 438 0.4612 MSYSRRSRYSPSPSPLPYKRYGRSVSRSLSRSMSRSRSRSVSRDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMESVEEADRCVKYLNRSVLEGRVITVEKFLWQQVSCVKQLFIKLSNHN 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1876g00010 145 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 37 125 - -
Vium1876g00010 145 MobiDBLite consensus disorder prediction 1 52 - -
Vium1876g00010 145 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 121 IPR000504 GO:0003723
Vium1876g00010 145 SMART rrm1_1 51 124 IPR000504 GO:0003723
Vium1876g00010 145 Gene3D - 5 127 IPR012677 -
Vium1876g00010 145 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 124 IPR000504 GO:0003723
Vium1876g00010 145 SUPERFAMILY RNA-binding domain, RBD 31 128 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1876g00010 Vium-Chr1876 73579 75793 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1876g00010 51 123 Eukaryotic Initiation Factors Gene Family AT2G36660 34.247 6.01e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1876g00010 - - aip:107613061 210.69