Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1876g00009 ATGTCGTACTCACGGAGGTCAAGGTATTCTCCTTCGCCTTCTCCTTTACCATATAAGCGATATGGTAGGTCTGTGTCCAGGTCCCTCTCAAGGTCCATGTCCAGAAGCCGTTCAAGGAGTGTATCAAGGGATGCAGAAAATCCAGGAAACAATCTGTATGTGACAGGATTGTCTCCTAGGATCACCAAGAGGGAACTGGAAAAGCATTTTGCTGCCGAGGGGAAAGTGATAGATGTACATTTGGTGGTTGATCCTTGGACAAGGGAATCCCGTGGGTTTGGTTTTGTGACAATGGAGAGTGTTGAGGAGGCCGATCGATGTGTAAAGTATTTGAATCGCTCTGTACTTGAAGGGCGTGTTATTACAGTTGAGAAGGTTAGCTGTGTGAAGCAGCTCTTCATCAAACTCTCAAATCACAACTAA 423 0.4586 MSYSRRSRYSPSPSPLPYKRYGRSVSRSLSRSMSRSRSRSVSRDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMESVEEADRCVKYLNRSVLEGRVITVEKVSCVKQLFIKLSNHN 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1876g00009 140 Gene3D - 5 131 IPR012677 -
Vium1876g00009 140 SUPERFAMILY RNA-binding domain, RBD 20 125 IPR035979 GO:0003676
Vium1876g00009 140 SMART rrm1_1 51 124 IPR000504 GO:0003723
Vium1876g00009 140 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Vium1876g00009 140 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 121 IPR000504 GO:0003723
Vium1876g00009 140 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 37 125 - -
Vium1876g00009 140 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1876g00009 Vium-Chr1876 73579 75794 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1876g00009 51 123 Eukaryotic Initiation Factors Gene Family AT2G36660 34.247 5.80e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1876g00009 - - aip:107613061 192.586