Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1876g00007 ATGTCGTACTCACGGAGGTCAAGGTATTCTCCTTCGCCTTCTCCTTTACCATATAAGCGATATGGTAGGTCTGTGTCCAGGTCCCTCTCAAGGTCCATGTCCAGAAGCCGTTCAAGGAGTGTATCAAGGGATGCAGAAAATCCAGGAAACAATCTGTATGTGACAGGATTGTCTCCTAGGATCACCAAGAGGGAACTGGAAAAGCATTTTGCTGCCGAGGGGAAAGTGATAGATGTACATTTGGTGGTTGATCCTTGGACAAGGGAATCCCGTGGGTTTGGTTTTGTGACAATGGAGAGTGTTGAGGAGGCCGATCGATGTGTAAAGTATTTGAATCGCTCTGTACTTGAAGGGCGTGTTATTACAGTTGAGAAGGCCAGAAGGCGACGTGGTCGAACCCCAACGCCAGGGAAGTATCTAGGGTTGAGAACTGTTCGTGGGAGACGCCGTTCTCCAAGTTACTCTCCTCGTCGTTCCCCTAGCTATTCTCCTTACAGAAGAAGCTACAGTCGGTCTCCCTATTCTTCAGACCGAAGTAGGAGTCGTTCTTACTCTCCTGACTATGGGCGGAGGCGATCCTATTCTCCATATTACTCACAAAGAAGGAGGTCTTACTCTCCATACTACAGCCGGTACAGGTCTTATGTGCGATATGATCATTATCGACACAGGTCATATTCTCGCTCTCGTTCTCCTTATAGCAGGTCTCCTGTCAGCATGCGTGACAGATCATACTCTCCCTATGACTGGCCGGATGGTCGCTCCTACAGAAGGAACCGTTACAGGTCTGTTTCACGAAGTACCTCACCCAATGATCGCTATTATGGAAGGCATCGTTACAGGTCTGTTTCTCACAGTGCCTCACCTAGGCCAAGGAGAAGGTCAAGGAGGAGCTACTCACGGAGTGCCACTCCCGTTTCGAAGAGGAGAGATTCTCCAAGTGTGTCTCCCAGGCCAAGGAGGAGTCCTTCAAGAAGCTCCAAGAGAAGTGCCAAATATTCGAAAGATCGGTCAAGGTCCTCCAGTGTGGTTGCAAGTTCAAGATCAGTATCCAGGTCTAATACTCCAAGATCTTCCTCTCCTTCAACTTGA 1092 0.489 MSYSRRSRYSPSPSPLPYKRYGRSVSRSLSRSMSRSRSRSVSRDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMESVEEADRCVKYLNRSVLEGRVITVEKARRRRGRTPTPGKYLGLRTVRGRRRSPSYSPRRSPSYSPYRRSYSRSPYSSDRSRSRSYSPDYGRRRSYSPYYSQRRRSYSPYYSRYRSYVRYDHYRHRSYSRSRSPYSRSPVSMRDRSYSPYDWPDGRSYRRNRYRSVSRSTSPNDRYYGRHRYRSVSHSASPRPRRRSRRSYSRSATPVSKRRDSPSVSPRPRRSPSRSSKRSAKYSKDRSRSSSVVASSRSVSRSNTPRSSSPST 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1876g00007 363 MobiDBLite consensus disorder prediction 126 199 - -
Vium1876g00007 363 SMART rrm1_1 51 124 IPR000504 GO:0003723
Vium1876g00007 363 FunFam Serine/arginine-rich splicing factor SR45a 2 134 - -
Vium1876g00007 363 MobiDBLite consensus disorder prediction 224 363 - -
Vium1876g00007 363 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 38 259 - -
Vium1876g00007 363 MobiDBLite consensus disorder prediction 1 51 - -
Vium1876g00007 363 MobiDBLite consensus disorder prediction 300 321 - -
Vium1876g00007 363 MobiDBLite consensus disorder prediction 337 363 - -
Vium1876g00007 363 Gene3D - 7 134 IPR012677 -
Vium1876g00007 363 MobiDBLite consensus disorder prediction 283 299 - -
Vium1876g00007 363 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Vium1876g00007 363 MobiDBLite consensus disorder prediction 154 182 - -
Vium1876g00007 363 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 121 IPR000504 GO:0003723
Vium1876g00007 363 SUPERFAMILY RNA-binding domain, RBD 32 139 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1876g00007 Vium-Chr1876 72304 75788 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1876g00007 51 132 Eukaryotic Initiation Factors Gene Family AT2G36660 32.927 7.25e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1876g00007 - - gmx:100808038 224.942