Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1875g00018 ATGGGTTTGCAAAGCGAACTAAACGACGTGTCGTCGGGTTCGATTCCGCTGCTGGTGTTGGCGCAGATAGCCATGTGCGTCAACTACCTCCGCTCGATGCTCTTCGCGCTGTTGCAATCCCTAGGTCTCGCCCGATTCCACACGCACCAGATCGTCGACGACCGCTTCCTCGCCGCCGTCGGATCCGGCCTCGCCGGCCTCATCATGCTCTCCGATCAGCTCGCCCTCAACAACCAATTATTCTTCTTCAAAGGAGCCGCCCACGACCACACCTGCGTGGTGTGCCAGGCCACCTTCCAGGACGGCGACCAGCTCCGCATGCTCCCCTGCCGCCACGTCTTCCACCGCCCCTGCTTCGACGGCTGGCTCCACCACTACAAGTTCAACTGTCCTCTCTGCCGCTCCCCGCTCCTTTCCGACGAGCGCGTGGCCCTCACCGAACGCCGCCTCGGCCGACAACTCATCTCTTGGTTCTCCCTTCACTGA 486 0.6214 MGLQSELNDVSSGSIPLLVLAQIAMCVNYLRSMLFALLQSLGLARFHTHQIVDDRFLAAVGSGLAGLIMLSDQLALNNQLFFFKGAAHDHTCVVCQATFQDGDQLRMLPCRHVFHRPCFDGWLHHYKFNCPLCRSPLLSDERVALTERRLGRQLISWFSLH 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1875g00018 161 Pfam Ring finger domain 91 134 IPR001841 -
Vium1875g00018 161 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Vium1875g00018 161 PANTHER RING ZINC FINGER PROTEIN-RELATED 82 144 - -
Vium1875g00018 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 148 IPR013083 -
Vium1875g00018 161 SMART ring_2 92 133 IPR001841 -
Vium1875g00018 161 CDD RING-H2_PA-TM-RING 91 134 - -
Vium1875g00018 161 SUPERFAMILY RING/U-box 87 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1875g00018 Vium-Chr1875 133671 134680 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1875g00018 1 161 C3H Transcription Factor Family AT1G15100 47.561 4.63e-46 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1875g00018 K16282 - gmx:100803789 279.256