Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1875g00017 ATGCTTAATAAGGACGCTTGCTCTCCCTCCTCCAATGGCGGATTCGGCCCCGCTGCCGTCTCTGGTCAATTGCCGTCAAACGGAGGCTACGGTTCGCTGTACTCAGCTCTGTCGAACGATAACCTTCCTTCGCTCTCCGCGAACTGCAGCAACGGAGGCGGCGTTTCGCTGTACCCATACTCGGACTCAACAACTCAGTATGACTCGTGCGTGATTCAGAAGCACCAGGACATGGTGAACCGTCAAAGCATGTGCCTGAATCGCCTGGTGGAGACTTCCAAAGAGGTGGATGCTCTGAGGCAGGAGAACGGTCAGCTCCGGGCAGCAAACAAGGAGCTGCAGAAGCAGCTGCACCTCGTCATCCAGGCTTCGCTGGAGAGTCAGTACGCCGCCGCCGGCAGTGGATCCTCCGGCCAGACTCAACCGACGCTGTTCGACGTCTTGCATGGCTTCCGCAGCCTCCACATTGGGGAAGGCAAAGAGAATTATGCCGATTGGAATAACAACAATAATCATAATCACAACAATATTTTGAATAATAATAATAACAAGGACCTGCAGGAAGCGTCAGACGAGAGTCCAACGAGCGTGATGGAGAATAACGTGGTGGAGGTTGAGAGATTCTCGCTCCCTAAGAGCATATCTGTGAGGTCCAATGGCTACTTGAAGATGGCTCAGTCTGCTGCTCTTGCCACCAATAATAATGTAACTCGCAATAAAGGTGCCACTCGCCCACGCGCCACCGCAACTCCACCTGAAGCCGTTCAGAAGGTGTATGTGCGGGGAGGGCAGAAAGAGGAAGAGCCTCTGGAAATGGTAGTGTATAACCAAGGGATGTTCAAAACTGAGCTGTGTAATAAGTGGCAGGAAACTGGTACATGCCCATACGGAGACCACTGCCAATTTGCTCACGGTATTGGGGAGCTTCGCCCAGTCATCCGCCACCCACGCTACAAAACCGAGGTCTGCAGGATGGTCCTTGCGGGGGTTGTGTGCCCATATGGCCATAGATGCCATTTCCGCCATGCACTCACTGAACAAGAGAAAGCTGTCGTATCACAGCCTAAGCCCAGAACAATGAAGCTGGAAAGATAA 1095 0.5288 MLNKDACSPSSNGGFGPAAVSGQLPSNGGYGSLYSALSNDNLPSLSANCSNGGGVSLYPYSDSTTQYDSCVIQKHQDMVNRQSMCLNRLVETSKEVDALRQENGQLRAANKELQKQLHLVIQASLESQYAAAGSGSSGQTQPTLFDVLHGFRSLHIGEGKENYADWNNNNNHNHNNILNNNNNKDLQEASDESPTSVMENNVVEVERFSLPKSISVRSNGYLKMAQSAALATNNNVTRNKGATRPRATATPPEAVQKVYVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAVVSQPKPRTMKLER 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1875g00017 364 FunFam zinc finger CCCH domain-containing protein 15-like 273 312 - -
Vium1875g00017 364 SUPERFAMILY CCCH zinc finger 276 311 IPR036855 GO:0046872
Vium1875g00017 364 PANTHER CCCH ZINC FINGER/TIS11-RELATED 75 351 IPR045877 GO:0003729
Vium1875g00017 364 FunFam Zinc finger protein 36, C3H1 type-like 1 313 349 - -
Vium1875g00017 364 ProSiteProfiles Zinc finger C3H1-type profile. 317 345 IPR000571 GO:0046872
Vium1875g00017 364 ProSiteProfiles Zinc finger C3H1-type profile. 279 307 IPR000571 GO:0046872
Vium1875g00017 364 Coils Coil 89 116 - -
Vium1875g00017 364 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 280 305 IPR000571 GO:0046872
Vium1875g00017 364 SUPERFAMILY CCCH zinc finger 313 347 IPR036855 GO:0046872
Vium1875g00017 364 Gene3D - 313 349 - -
Vium1875g00017 364 Gene3D - 274 312 - -
Vium1875g00017 364 MobiDBLite consensus disorder prediction 170 193 - -
Vium1875g00017 364 SMART c3hfinal6 279 306 IPR000571 GO:0046872
Vium1875g00017 364 SMART c3hfinal6 317 344 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1875g00017 Vium-Chr1875 98359 101216 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1875g00017 60 359 C3H Transcription Factor Family AT1G68200 48.052 3.40e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium1875g00017 zf-CCCH 3e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1875g00017 K18753 - gmx:100819250 598.971