Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1875g00016 ATGCTTAATAAGGACGCTTGCTCTCCCTCCTCCAATGGCGGATTCGGCCCCGCTGCCGTCTCTGGTCAATTGCCGTCAAACGGAGGCTACGGTTCGCTGTACTCAGCTCTGTCGAACGATAACCTTCCTTCGCTCTCCGCGAACTGCAGCAACGGAGGCGGCGTTTCGCTGTACCCATACTCGGACTCAACAACTCAGTATGACTCGTGCGTGATTCAGAAGCACCAGGACATGGTGAACCGTCAAAGCATGTGCCTGAATCGCCTGGTGGAGACTTCCAAAGAGGTGGATGCTCTGAGGCAGGAGAACGGTCAGCTCCGGGCAGCAAACAAGGAGCTGCAGAAGCAGCTGCACCTCGTCATCCAGGCTTCGCTGGAGAGTCAGTACGCCGCCGCCGGCAGTGGATCCTCCGGCCAGACTCAACCGACGCTGTTCGACGTCTTGCATGGCTTCCGCAGCCTCCACATTGGGGAAGGCAAAGAGAATTATGCCGATTGGAATAACAACAATAATCATAATCACAACAATATTTTGAATAATAATAATAACAAGGACCTGCAGGAAGCGTCAGACGAGAGTCCAACGAGCGTGATGGAGAATAACGTGGTGGAGGTTGAGAGATTCTCGCTCCCTAAGAGCATATCTGTGAGGTCCAATGGCTACTTGAAGATGGCTCAGTCTGCTGCTCTTGCCACCAATAATAATGTAACTCGCAATAAAGGTGCCACTCGCCCACGCGCCACCGCAACTCCACCTGAAGCCGTTAAGGTGTATGTGCGGGGAGGGCAGAAAGAGGAAGAGCCTCTGGAAATGGTAGTGTATAACCAAGGGATGTTCAAAACTGAGCTGTGTAATAAGTGGCAGGAAACTGGTACATGCCCATACGGAGACCACTGCCAATTTGCTCACGGTATTGGGGAGCTTCGCCCAGTCATCCGCCACCCACGCTACAAAACCGAGGTCTGCAGGATGGTCCTTGCGGGGGTTGTGTGCCCATATGGCCATAGATGCCATTTCCGCCATGCACTCACTGAACAAGAGAAAGCTGTCGTATCACAGCCTAAGCCCAGAACAATGAAGCTGGAAAGATAA 1092 0.5284 MLNKDACSPSSNGGFGPAAVSGQLPSNGGYGSLYSALSNDNLPSLSANCSNGGGVSLYPYSDSTTQYDSCVIQKHQDMVNRQSMCLNRLVETSKEVDALRQENGQLRAANKELQKQLHLVIQASLESQYAAAGSGSSGQTQPTLFDVLHGFRSLHIGEGKENYADWNNNNNHNHNNILNNNNNKDLQEASDESPTSVMENNVVEVERFSLPKSISVRSNGYLKMAQSAALATNNNVTRNKGATRPRATATPPEAVKVYVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAVVSQPKPRTMKLER 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1875g00016 363 SUPERFAMILY CCCH zinc finger 275 310 IPR036855 GO:0046872
Vium1875g00016 363 Gene3D - 312 348 - -
Vium1875g00016 363 Gene3D - 273 311 - -
Vium1875g00016 363 FunFam zinc finger CCCH domain-containing protein 15-like 272 311 - -
Vium1875g00016 363 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 279 304 IPR000571 GO:0046872
Vium1875g00016 363 FunFam Zinc finger protein 36, C3H1 type-like 1 312 348 - -
Vium1875g00016 363 ProSiteProfiles Zinc finger C3H1-type profile. 278 306 IPR000571 GO:0046872
Vium1875g00016 363 SMART c3hfinal6 278 305 IPR000571 GO:0046872
Vium1875g00016 363 SMART c3hfinal6 316 343 IPR000571 GO:0046872
Vium1875g00016 363 SUPERFAMILY CCCH zinc finger 312 346 IPR036855 GO:0046872
Vium1875g00016 363 Coils Coil 89 116 - -
Vium1875g00016 363 MobiDBLite consensus disorder prediction 170 193 - -
Vium1875g00016 363 ProSiteProfiles Zinc finger C3H1-type profile. 316 344 IPR000571 GO:0046872
Vium1875g00016 363 PANTHER CCCH ZINC FINGER/TIS11-RELATED 75 350 IPR045877 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1875g00016 Vium-Chr1875 98357 101216 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1875g00016 60 358 C3H Transcription Factor Family AT1G68200 48.052 2.43e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium1875g00016 zf-CCCH 2.9e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1875g00016 K18753 - gmx:100819250 592.423