Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1875g00013 ATGGACAAGGTTTGTGAGTTCTGCACGGCCCTGAGGCCACTTGTTTACTGTAAAGCTGATTCGGCATATCTTTGTCTATCCTGTGATGCGAAGGTGCATTTGGCAAATGCTTTGTCCGGCCGGCACCTCCGGAACCTTGTGTGTAACTCATGTGGACATCATGTTGCTTATGTTGTATGTTTGAACCACAAAATGTTAATCTGTCGAGACTGTGATAAAAAATTGCACAATGTTTCTTTATCACACCAGAAACGAGCTATCAGGAGTTTCATAGGTTGCCCTTCTGCTAAAGACTTTGCAGCACTCTGGGGGTTTGAATTGAATGAGATTGAAAACTGTGCCAGTCAGGATCAGTTTGATTCAGTTTCCTGTGTTTCTGCGGAATTGAATGTAGCACAAGTCTCAGGAAAGCCTGATATTCAAAATGAGGTCCCTTCACTGCTAGCTGGGGCCAAACTTGATGAGGAATCGACCGGTCAACAAGGTCAGATATTGCACAATCATCAAGAGCGTCAAACTATTGTGCAGCAGATTATTGATCTAAAATGGCTCCAACAAAATGAGGAGATTGATTATTCTGCGAAGATCAGTAGGCTAAAAGAAAAAAAATCATCACCTTCATTATATCACACTCTTAAGAAATTGGACGAAAAATTCAATGGTCAAGCAAAAAATTCCCAGGATTTGGCTACTGATGTTCTGGAAAAAGACTGTCCTATTGTGGAGCCGAGTACAGAAACTTTGCCTTCAACTTTTTCTCAACTTGATAATTTATCTTCATCTTCAATTATCGATCTTCCCTTGCATGGAGAATTGTTCTGGACGTGCAGAAGTCCACTTCGAAGTAATCAGCTGTGGTCCCAAAATATTCAAGACCTCGGTATATGTGAAGAACTTGTTCGTCTAGATGATTTTAACATCCCTGATGTTGACTTAACTTTCCAAAACTTCGATGAATTATTTGGAGGAGATCAGGATCCAATTAGAATATTGTTTGATGATCAAGATGTCTCCTGCTCTTCTTTAGAGAAGGATAAGTCAATCGACAAGTCAGATATTGACAATCTAAGTGCAATGGAGGATTCTTCGGCTTCTGCATCCATTAATCTCTCCCAATCTGATCATGAGAACAAGGATATGAACCCTCTCGGCCAGTACTGTCCAGAAAGCATGGATCCTACTCATGCAACTCAACCATTTGATTCAGCTATACCCTTATCTGTTTTGGGAATCAGTCTGGAAAGCAGTTTCACACATGAGGACGGTATCCTTTCTCCCTACAGTGAAGGGAAGGCTTATTCAGGCATGAGAAGCAATTTCGACTTCTATCCAGGAAACCTGGAGCTAATGTAA 1353 0.4109 MDKVCEFCTALRPLVYCKADSAYLCLSCDAKVHLANALSGRHLRNLVCNSCGHHVAYVVCLNHKMLICRDCDKKLHNVSLSHQKRAIRSFIGCPSAKDFAALWGFELNEIENCASQDQFDSVSCVSAELNVAQVSGKPDIQNEVPSLLAGAKLDEESTGQQGQILHNHQERQTIVQQIIDLKWLQQNEEIDYSAKISRLKEKKSSPSLYHTLKKLDEKFNGQAKNSQDLATDVLEKDCPIVEPSTETLPSTFSQLDNLSSSSIIDLPLHGELFWTCRSPLRSNQLWSQNIQDLGICEELVRLDDFNIPDVDLTFQNFDELFGGDQDPIRILFDDQDVSCSSLEKDKSIDKSDIDNLSAMEDSSASASINLSQSDHENKDMNPLGQYCPESMDPTHATQPFDSAIPLSVLGISLESSFTHEDGILSPYSEGKAYSGMRSNFDFYPGNLELM 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1875g00013 450 ProSiteProfiles Zinc finger B-box type profile. 43 87 IPR000315 GO:0008270
Vium1875g00013 450 CDD Bbox1_BBX-like 4 44 - -
Vium1875g00013 450 SMART bboxneu5 48 87 IPR000315 GO:0008270
Vium1875g00013 450 SMART bboxneu5 1 47 IPR000315 GO:0008270
Vium1875g00013 450 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1875g00013 Vium-Chr1875 89045 96037 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1875g00013 1 328 C2C2-CO-like Transcription Factor Family AT1G68190 37.764 7.12e-63 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1875g00013 - - vun:114191779 823.928