Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1875g00010 ATGGTAGATGAGTCAATTTCACTGATAAAACATGTTCCTAGCTTTGCAAGAGGTTTTAGCATTCTGCTAGTGCATGATGACAAAATTTCACGTTCTTATCTCTCAACAATTCTTCAGCTATATTCTTTCAAAGTTACTGCTACAAATAAGGCATCCGCTGCTGCATCCATGATTTGCCATCAAGAAGGCACGTTCAAACTGATAATGGCTAAAGCTGATATGGCTGACATGGATATCCCTTCTTTTCTGGATGTAGTAGTTCAAAAGGATCTTCCTGTCATCTTCATCTATTCTGGAGTGTTTGATGATGTAAATAAGAAAGCTTTAGCTACAGGATTGTGTTATTTCCTTAAGGAGCCAATCACTCCGAATGATCTTCAATATCTCTGGCAACATGTGTATCACTCAAGAGCCTATTCACCCAAAAACACTCGAAATGCAGACTTCCATGCAAAGGGATTACAGAATACCCAGATGAAACAGGTGACAAACGCCCAATGTCAGGTTCTTGGAGCAAAAAGCGGAAGAAGCGATGCTGATACATTCGGCAAAGAAAAAGGAAAGAAAACCCTCAACAACACAATGCCAACCACAAAGTGCAAAGGTCACAAAGAATATGGAAAAAGAAAGCATGATGACTATGCAGGCAAGAAAAAAGAAAAGAGAGATGTTGTGCAGGAAAAGCCAGATTCGTTGGGATCAGCCAAGATGAACATTAACAACCTCAATGAATATTTCAGAATGTCTGAGCACAAAAAACGTTTGAGCGTTTGGACTCCTGAGTTGCATCAAAAGTTTTTAGAAGCAGTGAAAGAATTGGGAGACAACTTTGCTCGTCCAAAACAGATATTAGTTCGGATGAATGCCAGTGAGCCTTACCTCACTGTTCGCCAAGTTGCAAGTCATTTGCAGAAATACAGATTGCGTTTGAAAGGTGAAGAGAGCTCTCTCAATTCTGATTTGCCTAGAGTATCGTCCTCAAGACACAAAGCCAACTCTTCTTCGTCTGAAGGATCCACCTTGGAAACAAAAGGTCTCCCAGCACCAAAAGTTTTCTTGAATGTGAACCATAATCAAGATCAGATTCCAGTGAACAGCTTGGGAATGGAATTCACAGATTCTTGGGATTCACAACCAATGTCAGGTGCTTCAATGGATTCGAATATACCTGGAACTGATTTATGTGAATTCGTAGAAACGTTTCTGGAAGATTCTGATTGTTTCAATTTGCATAAATATGAATCCAATCCTGCTGCTGTTGATCAATGTGCTGAGATGCTAAGAAATGTTCTAGAAGGGGTTCCCCTTAATTAA 1314 0.3988 MVDESISLIKHVPSFARGFSILLVHDDKISRSYLSTILQLYSFKVTATNKASAAASMICHQEGTFKLIMAKADMADMDIPSFLDVVVQKDLPVIFIYSGVFDDVNKKALATGLCYFLKEPITPNDLQYLWQHVYHSRAYSPKNTRNADFHAKGLQNTQMKQVTNAQCQVLGAKSGRSDADTFGKEKGKKTLNNTMPTTKCKGHKEYGKRKHDDYAGKKKEKRDVVQEKPDSLGSAKMNINNLNEYFRMSEHKKRLSVWTPELHQKFLEAVKELGDNFARPKQILVRMNASEPYLTVRQVASHLQKYRLRLKGEESSLNSDLPRVSSSRHKANSSSSEGSTLETKGLPAPKVFLNVNHNQDQIPVNSLGMEFTDSWDSQPMSGASMDSNIPGTDLCEFVETFLEDSDCFNLHKYESNPAAVDQCAEMLRNVLEGVPLN 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1875g00010 437 PANTHER - 11 319 - -
Vium1875g00010 437 MobiDBLite consensus disorder prediction 317 344 - -
Vium1875g00010 437 NCBIfam myb-like DNA-binding domain, SHAQKYF class 256 309 IPR006447 GO:0003677
Vium1875g00010 437 Pfam Myb-like DNA-binding domain 257 307 IPR001005 -
Vium1875g00010 437 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 250 311 IPR017930 -
Vium1875g00010 437 MobiDBLite consensus disorder prediction 178 230 - -
Vium1875g00010 437 Gene3D - 19 153 - -
Vium1875g00010 437 MobiDBLite consensus disorder prediction 318 342 - -
Vium1875g00010 437 ProSiteProfiles Response regulatory domain profile. 20 134 IPR001789 GO:0000160
Vium1875g00010 437 MobiDBLite consensus disorder prediction 206 229 - -
Vium1875g00010 437 SUPERFAMILY Homeodomain-like 252 311 IPR009057 -
Vium1875g00010 437 Gene3D - 249 312 - -
Vium1875g00010 437 FunFam Two-component response regulator 249 313 - -
Vium1875g00010 437 SUPERFAMILY CheY-like 18 148 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1875g00010 Vium-Chr1875 70234 73148 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1875g00010 12 323 Response Regulator Gene Family AT1G68210 29.283 1.68e-29 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vium1875g00010 Myb_DNA-binding 3.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1875g00010 - - vun:114191433 686.411