Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1873g00002 ATGGGTGCAGGAGATTACTACAAGATCCTCAAGGTGAACCGCAATGCCTCGGATGAAGAACTCAAGAGAGCATATAAGAGGTTGGCCATGAAGTGGCACCCAGATAAGAACCATCAGCACCACACTGTTACGAAAGAAGAAGCTGAGGCTAAGTTCAAGCAGGTTTCGGAGGCTTATGATGTTCTCAGCGACCCCAAGAAGCGCCAGATCTACGATTTTTATGGCCACTATCCCTTGAACTCTTTAAAGGTGAAGGGTGATGGGGGTGTTAGGGTCCCCAAGAACGAGAACGTTGGGGTGGTTGAGAGAAAATTGCTGTGCACGCTTGAGGAACTTTACAAAGGTTGCAAAAAGAAGTTGAAGATCTCAAGGACTATACATCATGAATTCGGTAAGTTGAAGACTGTGGAAGAGATACTGAAAATAGATATCAAACCTGGTTGGAAGAAAGGCACAAAAATAACATTTCCTGGGAAAGGCAACCAAGAAGCAGAAGCTAGTGCTGCTGATGATCTAATCTTTGTGGTGGATGAAAAACCACATGCTTTATTCAAGAGGGATGGAAATGATTTGGTTGTGACACAAAAAATCTTACTTGTAGAGGCTCTTGTGGGAAAGACTTTCAATTTAACAACCTTGGATGGAAGAGAGCTCACAATTCAAGTGACTGATGTTGTGAAACCAAAATTTGTGTTGGTGGTCCCAAATGAAGGAATGCCCATCTCAAAGGAACTTGGAAAGAAAGGAAACTTGAGAATCAAGTTTGATGTTATGTTCCCATCAAGGCTTACCACACAACAGAAGTATGAGCTGAAAAAGATTTTGAGCAACACTGATGACTAA 843 0.4235 MGAGDYYKILKVNRNASDEELKRAYKRLAMKWHPDKNHQHHTVTKEEAEAKFKQVSEAYDVLSDPKKRQIYDFYGHYPLNSLKVKGDGGVRVPKNENVGVVERKLLCTLEELYKGCKKKLKISRTIHHEFGKLKTVEEILKIDIKPGWKKGTKITFPGKGNQEAEASAADDLIFVVDEKPHALFKRDGNDLVVTQKILLVEALVGKTFNLTTLDGRELTIQVTDVVKPKFVLVVPNEGMPISKELGKKGNLRIKFDVMFPSRLTTQQKYELKKILSNTDD 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1873g00002 280 SUPERFAMILY HSP40/DnaJ peptide-binding domain 184 268 IPR008971 GO:0006457|GO:0051082
Vium1873g00002 280 CDD DnaJ 5 64 IPR001623 -
Vium1873g00002 280 SUPERFAMILY HSP40/DnaJ peptide-binding domain 103 181 IPR008971 GO:0006457|GO:0051082
Vium1873g00002 280 FunFam DNAJ heat shock family protein 180 275 - -
Vium1873g00002 280 Pfam DnaJ C terminal domain 102 260 IPR002939 -
Vium1873g00002 280 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Vium1873g00002 280 FunFam DnaJ-like subfamily B member 13 2 99 - -
Vium1873g00002 280 Gene3D - 104 179 - -
Vium1873g00002 280 Gene3D - 181 261 - -
Vium1873g00002 280 PRINTS DnaJ domain signature 47 67 IPR001623 -
Vium1873g00002 280 PRINTS DnaJ domain signature 7 25 IPR001623 -
Vium1873g00002 280 PRINTS DnaJ domain signature 67 86 IPR001623 -
Vium1873g00002 280 PRINTS DnaJ domain signature 25 40 IPR001623 -
Vium1873g00002 280 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 275 - -
Vium1873g00002 280 SUPERFAMILY Chaperone J-domain 4 80 IPR036869 -
Vium1873g00002 280 Pfam DnaJ domain 5 72 IPR001623 -
Vium1873g00002 280 ProSiteProfiles dnaJ domain profile. 5 75 IPR001623 -
Vium1873g00002 280 Gene3D DnaJ domain 3 103 IPR036869 -
Vium1873g00002 280 FunFam Dnaj homolog subfamily b member 97 179 - -
Vium1873g00002 280 SMART dnaj_3 4 67 IPR001623 -
Vium1873g00002 280 CDD DnaJ_C 101 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1873g00002 Vium-Chr1873 7136 9560 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1873g00002 6 74 C2H2 Transcription Factor Family AT1G74250 39.130 1.28e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1873g00002 K09510 - gmx:100786068 497.278