Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1869g00001 ATGGAAGGGAATGCGAAAAGCGAGCAAATCGTGGATGTAGGGGCGGTTGTCGAAGCTGTTTCAGCTGATGACGGTGATGCTCCTCTCTACAGCCTCGAAAGTCTTTGCATGCGATGTGGTGAAAACGGGATTACAAGATTTTTATTGACTTTAATTCCTCACTTCAGAAAGATTTTGTTATCAGCTTTTGAATGTCCACACTGTGGTGAGAGGAACAATGAAGTACAGTTTGCTGGTGAAATTCAACCACGTGGTTGTCGTTACACTTTGGCAATCCCATCAGGCGAGCAGAAGGTTGGGTTTATTCAAATTTCAACTCCCCATCCCCATATGATTATTGTAAATGATATAACACAACATATATGGCCCCTAGATGAATTTTAA 384 0.4193 MEGNAKSEQIVDVGAVVEAVSADDGDAPLYSLESLCMRCGENGITRFLLTLIPHFRKILLSAFECPHCGERNNEVQFAGEIQPRGCRYTLAIPSGEQKVGFIQISTPHPHMIIVNDITQHIWPLDEF 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1869g00001 127 PANTHER ZINC FINGER PROTEIN ZPR1 13 95 IPR040141 -
Vium1869g00001 127 SMART zpr1 34 120 IPR004457 GO:0008270
Vium1869g00001 127 Gene3D ZPR1, zinc finger domain 26 79 IPR042452 -
Vium1869g00001 127 Pfam ZPR1 zinc-finger domain 34 96 IPR004457 GO:0008270
Vium1869g00001 127 FunFam Zinc finger protein ZPR1 24 79 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1869g00001 29 92 C2H2 Transcription Factor Family AT5G22480 34.375 2.29e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1869g00001 K06874 - vum:124828227 265.774