Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1866g00006 ATGGAACAAGGAGAAGGAGGAAGCACCAGAAGGAGAGGGAAAGAGGGTGAAGCCACGCGCTACAAAGGAATCAGGATGAGGAAGTGGGGCAAGTGGGTCGCTGAGATTCGAGAACCCAACAAGCGTTCACGGATTTGGCTCGGCTCCTATTCCACGCCCGTCGCGGCGGCGCGTGCTTATGACACCGCTGTCTTCTATCTTCGGGGGCCCTCCGCCCGCCTCAACTTCCCCGACCTTCTCGCCGTTGAGGGCCCTGCAGCCGCTGCCTCTGACATGTCTGCTGCCTCCATCAGGAAGAAGGCCACCGAGGTCGGCGCCAGAGTTGACGCGCTTCACCGCCAGCAACCGCATGTTCCCGTCGCAGGAGAATTTGCCGACCGGGTCGACCTCAATAAGACACCCGAACCTGAAAATTCGGATTGTGACTGGGATGGCGATTAG 441 0.5964 MEQGEGGSTRRRGKEGEATRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLAVEGPAAAASDMSAASIRKKATEVGARVDALHRQQPHVPVAGEFADRVDLNKTPEPENSDCDWDGD 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1866g00006 146 Pfam AP2 domain 19 69 IPR001471 GO:0003700|GO:0006355
Vium1866g00006 146 CDD AP2 19 79 IPR001471 GO:0003700|GO:0006355
Vium1866g00006 146 MobiDBLite consensus disorder prediction 126 146 - -
Vium1866g00006 146 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Vium1866g00006 146 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Vium1866g00006 146 PRINTS Ethylene responsive element binding protein signature 59 79 IPR001471 GO:0003700|GO:0006355
Vium1866g00006 146 Gene3D AP2/ERF domain 19 78 IPR036955 GO:0003700|GO:0006355
Vium1866g00006 146 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Vium1866g00006 146 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Vium1866g00006 146 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 11 140 - -
Vium1866g00006 146 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1866g00006 Vium-Chr1866 73049 73956 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1866g00006 21 145 AP2-EREBP Transcription Factor Family AT3G50260 64.706 9.47e-54 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium1866g00006 AP2 3.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1866g00006 K09286 - gmx:100789373 253.062