Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1866g00004 ATGGAACCATCGGAGAATTGCTCTGTTAAAGTCGCTCTTCACATTCGTCCTCTCATTGCCGATGAACGACAGCAAGGTTGCATTGAATGTGTTTCCGTCACGCCTGGGAAGCCTCAGGTTCAGATTGGATCGCATTCCTTTACATTTGACCATGTTTATGGAAATAGTGGGTCTCCTTCGGTTGACATGTTTGAGGAATGCGTTGCTCCATTGGTTGATGGCTTATTCCAAGGATACAATGCTACAGTACTTGCATATGGTCAGACAGGATCTGGGAAAACGTATACCATGGGAACTGGCTATAATGACAATTGTCGGAGCGGATTAATTCCTCAGGTTATGAGTGCCTTATTCAACAAAGTTGAAACACTAAAGCATCAAACAGAATTTCAGTTGCGAGTTTCCTTCATTGAGATTTTAAAGGAAGAGGTCAGGGACCTGTTGGATGCGGTATCTTTGGGCAAATCAGACACCTCTAACTCTAATGGCCATTCTGGAAAAATAACTGTTCCTGGGAAGTCACCAATACAAATTCGTGAAACAGCAAATGGAATAATAACACTGGCAGGAATAACTGAAATTGCTGTAAGTACATTACATGAGATGTCTGCATACTTGGAACAGGGTTCTTTAAGTAGGGCAACGGGAAGTACAAATATGAACAACCAGTCAAGTCGGTCACATGCCATTTTCACAATTACATTAGAACAAATGCACAAGCTCCATTCTGTTTCTACCACCAATGACTCTTCAGATGAGGATATGGGTGAAGAATACCTTTCAGCAAAGCTCCATTTGGTAGATCTAGCTGGATCTGAACGAGCTAAAAGAACAGGTTCTGATGGCCTTCGTTTGAAAGAAGGAATACACATCAACAAAGGTCTTCTTGCTCTTGGTAATGTCATAAGTGCACTAGGTGATGAGAAAAAGCGAAAGGAAGGTGTGCATGTTCCTTATCGTGATAGCAAACTCACTCGACTCTTACAGGATTCACTTGGTGGAAACAGCAAAACTGTCATGATAGCTTGCATAAGTCCTGCTGATGTCAATGCCGAGGAAACTCTCAACACTCTCAAGTATGCAAACCGTGCACGCAATATTCAAAATAAGCCTGTTGTTAATCGAGATTTAATATCGAATGAGATGCAGCAAATGCGCCAACAGTTGAAGTACTTGCAGGCTGAACTCTGTTCTCGGGGAGCAGCTCCCTCTGATGAAGTGCGGGTTCTTAAGGAAAGGATTGCTTGGCTCGAGGCCACTAATGAGGACCTTTACAGAGAACTTCATGAATATCGCAGTAGATGTGCTTTTGTAGAGAGATGTGAAATTGATGAACCGGCAGATAGAAACATTTATCTCATGAAAGCTGATGGGCTTGAGAGGCGCTTTCAGAGCTCAGATTCATCTGATCATCCCTTGGTTGGAAGTATATCTGGTGAAGATTCAAGGGAAACTGATGAAGCAGAAAAGGAGTTGGAGCATGTGCTATTACAAAATACCATGGATAAAGAATTGAATGAGTTGAATAAGCGGTTGGAGCAGAAAGAGTCTGAGATGAAGCTCATTGGAGTTGATACTGAGGCACTCAAGCAACACTTCGGGAAGAAAATTGTGGAACTTGAGGAGGAGAAAAGAAAAGTACAGGAAGAGAGGGACAGATTATGGCATGAGGTAGAGAATCTTGCTACTAATTCAGACGGGCTAGCACACAAAACCCAAGATGTTCGTGGCCAAAAGTTGAAAGCATTGGAAGCACAGATTTTAGACCTCAAGAAGAAACAAGAAAGCCAGGTGCAACTCTTAAAGCAAAAGGAGAAGAGTGAAGAAGCTGCAAGAAGACTGCAGGCTGAGATACAGTATATCAAGGCTCAGAAGGTTCAGTTGCAGCATAAAATGAAACAAGAGGCTGAACAATTTCGACAATGGAAGGCCTCTCGTGAGAAGGAGCTGCTCCAGTTGAAAAAAGTAGGAAGAAAGAATGAATACGAAAGACATAAACTTGAGGCTCTAAACCATCGCCAGAAAATGGTTCTTCAAAGGAAGACAGAGGAAGCAACAATGGCTACAAAAAGGCTAAAAGAACTGTTGGAAGCCCGTAAATCGTCTCCTCGTGACAACTCTGTTTGTTCAAATGGACATCTACTTCCCGGGCTGGTCAATGAAAAATCCCTCCAGAAGTGGCTTGATCAGGAGGTGGAGGTCATGGTTCATGTGCATGAAGTTCGTGCTGAATTTGACAAACAAAACCAAGTCCAAGCTGCACTGGAAGAAGAGTTGGTTTTACTAAAGCAGGATCAGCTTTCAGATGAGCTGATTATTCCGAAAGGAAAGAGCAGATATTTGAGGCTGTTATCCATGTCGCCAGATGCAAAAGTTGAGAGAATAGCTTCCCTCGAGAACATGCTGAGCATGTCTTCAGTTGCTTTAAAAGCCATGGCTTCACAACTTACTGAGGCAGAAGAAAGGGAACGCACGTTAAACAACCGTGGTCGTTGGAATCAGCTACGCTCAATGGGAGACGCAAAGAATGTGCTTCAGTATTTGTTCAATGCTACTGCAGAAGCAAGGTGCCAATTGTTGGAAAAGAATATGGAACTTAAGGATTTGAAAGAGCAACTAAATGAACTTGTAGCACTATTACAACAAAGTGAAGCACAAAGAAAAGAACTTGTAAAGGAGGAAAAAATAAGGGAACAAGCTGTTGCCATCACATTGAATACATCGGCATTGGAAAATTCACGGTCCTTGAAACATCTTGCTGATGAAATGAGTGATCCGTTGTCTCCAATGTCACTTCCTGCACCAAAGCAACTCAAATTCACACCTGGAGTTGTTAATTGGTCCGTCACAGAGTCGGCTACATTTTTAAACGAAGCACGAAAGATGATACCCATTGGGGAGTTGTCAACTAAGAGGCTAGCTGCTATGGGACAAGCCGGAAAACTTTGGAAGTGGAAGAGAAGTCATCATCAATGGCTGCTGCAGTTTAAATGGAAGTGGCAGAAGCCCTGGAAACTCTCAGAATGGATCAAACACAGTGATGAGACCATTATGAGGTCAAGGCCTCGAGCACAAGCTTTAATTAATGTGATGTGA 3096 0.427 MEPSENCSVKVALHIRPLIADERQQGCIECVSVTPGKPQVQIGSHSFTFDHVYGNSGSPSVDMFEECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGYNDNCRSGLIPQVMSALFNKVETLKHQTEFQLRVSFIEILKEEVRDLLDAVSLGKSDTSNSNGHSGKITVPGKSPIQIRETANGIITLAGITEIAVSTLHEMSAYLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMHKLHSVSTTNDSSDEDMGEEYLSAKLHLVDLAGSERAKRTGSDGLRLKEGIHINKGLLALGNVISALGDEKKRKEGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADVNAEETLNTLKYANRARNIQNKPVVNRDLISNEMQQMRQQLKYLQAELCSRGAAPSDEVRVLKERIAWLEATNEDLYRELHEYRSRCAFVERCEIDEPADRNIYLMKADGLERRFQSSDSSDHPLVGSISGEDSRETDEAEKELEHVLLQNTMDKELNELNKRLEQKESEMKLIGVDTEALKQHFGKKIVELEEEKRKVQEERDRLWHEVENLATNSDGLAHKTQDVRGQKLKALEAQILDLKKKQESQVQLLKQKEKSEEAARRLQAEIQYIKAQKVQLQHKMKQEAEQFRQWKASREKELLQLKKVGRKNEYERHKLEALNHRQKMVLQRKTEEATMATKRLKELLEARKSSPRDNSVCSNGHLLPGLVNEKSLQKWLDQEVEVMVHVHEVRAEFDKQNQVQAALEEELVLLKQDQLSDELIIPKGKSRYLRLLSMSPDAKVERIASLENMLSMSSVALKAMASQLTEAEERERTLNNRGRWNQLRSMGDAKNVLQYLFNATAEARCQLLEKNMELKDLKEQLNELVALLQQSEAQRKELVKEEKIREQAVAITLNTSALENSRSLKHLADEMSDPLSPMSLPAPKQLKFTPGVVNWSVTESATFLNEARKMIPIGELSTKRLAAMGQAGKLWKWKRSHHQWLLQFKWKWQKPWKLSEWIKHSDETIMRSRPRAQALINVM 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1866g00004 1031 Coils Coil 809 829 - -
Vium1866g00004 1031 Pfam Kinesin motor domain 35 367 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1866g00004 1031 PRINTS Kinesin heavy chain signature 78 99 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1866g00004 1031 PRINTS Kinesin heavy chain signature 317 338 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1866g00004 1031 PRINTS Kinesin heavy chain signature 263 281 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1866g00004 1031 PRINTS Kinesin heavy chain signature 218 235 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1866g00004 1031 Coils Coil 375 395 - -
Vium1866g00004 1031 ProSiteProfiles Kinesin motor domain profile. 8 367 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1866g00004 1031 Coils Coil 498 525 - -
Vium1866g00004 1031 CDD KISc_KIF4 7 368 - -
Vium1866g00004 1031 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 398 IPR027417 -
Vium1866g00004 1031 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 1 1020 IPR027640 GO:0003777|GO:0007018
Vium1866g00004 1031 FunFam kinesin-like protein KIN-4A isoform X1 2 395 - -
Vium1866g00004 1031 Coils Coil 678 698 - -
Vium1866g00004 1031 Coils Coil 580 631 - -
Vium1866g00004 1031 MobiDBLite consensus disorder prediction 463 488 - -
Vium1866g00004 1031 Coils Coil 530 557 - -
Vium1866g00004 1031 Coils Coil 407 434 - -
Vium1866g00004 1031 Gene3D Kinesin motor domain 1 395 IPR036961 -
Vium1866g00004 1031 Coils Coil 852 893 - -
Vium1866g00004 1031 Coils Coil 738 758 - -
Vium1866g00004 1031 SMART kinesin_4 6 375 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1866g00004 1031 ProSitePatterns Kinesin motor domain signature. 262 273 IPR019821 GO:0003777|GO:0005524|GO:0007018
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1866g00004 Vium-Chr1866 17658 30433 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1866g00004 9 400 Calmodulin-binding Proteins AT5G65930 35.101 3.43e-56 210