Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1866g00002 ATGCAAAGGGCAACGGCAGCACTCCTCCCTCTGTTGCTACATATAATCAGCCTCGCCACCACTTGCGGTGGCTCCACGGTGTCCTCCGACGCGGTGTGGTTGCTGTCGTTTAAACGGGAAGCGGACCAAGACAACAGGCTCCTCTACACTCTGAACGAGCCGTACGACTACTGCGAGTGGGAGGGCGTGAAGTGTGCACAAGGGAGAGTGGTCCGTTTCGTGGTCCAGTCCATGGGCCTGCGCGGCCCATTCCCTCCGGACACCCTGACGAAGCTGGACCAGCTCCGCGTGATGAGCCTCCGTAACAACTCCCTCTACGGGCCCATCCCTGATCTCTCCTCTCTCACCAACCTCAAGGCTCTCTTCCTCGACCACAACAACTTCTCCGGTTCCTTCCCTCCTTCCCTCCTCCTCCTCCACCGCATCCTCACTCTCTCCCTCTCTCACAACAATCTCTCCGGTTCAATCCCGGTTCGGCTCACTCTCCTCGACCGTCTCATAGCCCTCCGTCTCGACTCCAACAACTTCTCCGGCACGCTCCCTCCTCTCAACCAAACCGCTCTCAAACTGCTCAATGTCTCCAACAACAACCTGACCGGTCCTGTTCCCGTTACTCCGACCCTCTCTAAACTCAACGCCGCCTCCTTTTCGGGAAACCCTGGCCTCTGCGGGGAGATTGTTCACCGAGAGTGTGGCTCGCGCTCCCGCTTCTTCGGCCCCGCCACGTCCACCTCCACGGCGCCGTTGAGTCAGAGCGAACAGTCTCAGGGTATTTTGGTTGTGCCTGCTTCCGCCCAAACAAAGCGTCATCGAAAGACTGGGCTGCTGGTTGTGGGCTTTGTTGTGGCGGGTGTTCTTGTGAGTGTTTTTGTTGTGTCTGTGGTTTCGCTTGTGAGGAGGAGGCAGGCGGCGGCGGGGAAAGCGGTTGTTGCGGAGGGGGGTGAGGTGGAGGGGGTTGTGGAGGAGGAGGAGAGGGAGGTGAAGGTGAGGAGGATGGAGGAGGCGCACAGGAGTGGGAAACTTGTGTTCTGCTGCGGGGAGGTGCAGCAGTATACGCTGGAGATGCTGATGCGGGCTTCGGCGGAGTTGCTGGGGAGGGGGAGCGTGGGGACGACGTACAAGGCGGTGCTGGATTCGCGGTTGATTGTGACGGTGAAGAGGTTGGATGGGGGGAAGAGTGGGGGGAGTGATGGAGTAGTGTTTGAGCGCCACATGGAGGCTGTGGGGAGGCTTCGCCACCCCAATTTGGTTCCTTTGAGGGCTTATTTTCAGGCCAAGGGAGAGAGGCTTGTCATATATGATTATCAGCCCAATGGCAGCATCTTCAACCTCGTTCACGGTTCAAGATCGGCGAGGGCGAAGCCTTTGCATTGGACATCATGCTTGAAAATAGCCGAAGATGTGGCACACGGACTTGCTTATATACATCAAGTTTCAACTCTAATTCATGGCAACCTGAAATCTTCTAACGTTCTTCTTGGGACGGGCTTTGAAGCCTGTATTACGGACTATTGTTTGTCCCTCTTTGCAGATTCTTCGTTCACTGAAGATCCCGATTCTGCGGCTTATAGAGCACCCGAGGCTCGCAACTCTAGCGGCAGAGCCACATCCAAGTCTGATGTTTATGCTTTTGGAGTGCTTCTACTAGAGCTTTTGACCGGTAAACACCCTTCCCAACAACCTTTTCTTGCACCAGCGGATTTGCAAGATTGGGTGAGAACAATGAGAGATGATGATGGCAGTGAAGACAACCGGCTAGAGATGCTCACGGAGGTTGCCAGTATTTGCAGTGCAACCTCGCCGGAGCAGAGGCCAGCAATGTGGCAAGTCCTTAAGATGATACAGGGAATAAAGGACAGCGTTTCGATGGAGGATAATTCATTTACCGGGCTCTCTTAG 1899 0.5561 MQRATAALLPLLLHIISLATTCGGSTVSSDAVWLLSFKREADQDNRLLYTLNEPYDYCEWEGVKCAQGRVVRFVVQSMGLRGPFPPDTLTKLDQLRVMSLRNNSLYGPIPDLSSLTNLKALFLDHNNFSGSFPPSLLLLHRILTLSLSHNNLSGSIPVRLTLLDRLIALRLDSNNFSGTLPPLNQTALKLLNVSNNNLTGPVPVTPTLSKLNAASFSGNPGLCGEIVHRECGSRSRFFGPATSTSTAPLSQSEQSQGILVVPASAQTKRHRKTGLLVVGFVVAGVLVSVFVVSVVSLVRRRQAAAGKAVVAEGGEVEGVVEEEEREVKVRRMEEAHRSGKLVFCCGEVQQYTLEMLMRASAELLGRGSVGTTYKAVLDSRLIVTVKRLDGGKSGGSDGVVFERHMEAVGRLRHPNLVPLRAYFQAKGERLVIYDYQPNGSIFNLVHGSRSARAKPLHWTSCLKIAEDVAHGLAYIHQVSTLIHGNLKSSNVLLGTGFEACITDYCLSLFADSSFTEDPDSAAYRAPEARNSSGRATSKSDVYAFGVLLLELLTGKHPSQQPFLAPADLQDWVRTMRDDDGSEDNRLEMLTEVASICSATSPEQRPAMWQVLKMIQGIKDSVSMEDNSFTGLS 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1866g00002 632 SUPERFAMILY Protein kinase-like (PK-like) 362 618 IPR011009 -
Vium1866g00002 632 FunFam Leucine-rich repeat receptor-like protein kinase 141 233 - -
Vium1866g00002 632 Gene3D Ribonuclease Inhibitor 186 233 IPR032675 -
Vium1866g00002 632 Gene3D Transferase(Phosphotransferase) domain 1 437 629 - -
Vium1866g00002 632 Pfam Protein kinase domain 361 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1866g00002 632 Gene3D Ribonuclease Inhibitor 27 185 IPR032675 -
Vium1866g00002 632 ProSiteProfiles Protein kinase domain profile. 358 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1866g00002 632 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 620 IPR046959 -
Vium1866g00002 632 FunFam Probable inactive receptor kinase At5g67200 29 139 - -
Vium1866g00002 632 Gene3D Phosphorylase Kinase; domain 1 320 435 - -
Vium1866g00002 632 SUPERFAMILY L domain-like 26 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1866g00002 Vium-Chr1866 11246 14791 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1866g00002 19 626 Receptor kinase-like Gene Family AT3G50230 53.594 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium1866g00002 Pkinase 1.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1866g00002 - - gmx:100783086 923.309