Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1866g00001 ATGCAAAGGGCAACGGCAGCACTCCTCCCTCTGTTGCTACATATAATCAGCCTCGCCACCACTTGCGGTGGCTCCACGGTGTCCTCCGACGCGGTGTGGTTGCTGTCGTTTAAACGGGAAGCGGACCAAGACAACAGGCTCCTCTACACTCTGAACGAGCCGTACGACTACTGCGAGTGGGAGGGCGTGAAGTGTGCACAAGGGAGAGTGGTCCGTTTCGTGGTCCAGTCCATGGGCCTGCGCGGCCCATTCCCTCCGGACACCCTGACGAAGCTGGACCAGCTCCGCGTGATGAGCCTCCGTAACAACTCCCTCTACGGGCCCATCCCTGATCTCTCCTCTCTCACCAACCTCAAGGCTCTCTTCCTCGACCACAACAACTTCTCCGGTTCCTTCCCTCCTTCCCTCCTCCTCCTCCACCGCATCCTCACTCTCTCCCTCTCTCACAACAATCTCTCCGGTTCAATCCCGGTTCGGCTCACTCTCCTCGACCGTCTCATAGCCCTCCGTCTCGACTCCAACAACTTCTCCGGCACGCTCCCTCCTCTCAACCAAACCGCTCTCAAACTGCTCAATGTCTCCAACAACAACCTGACCGGTCCTGTTCCCGTTACTCCGACCCTCTCTAAACTCAACGCCGCCTCCTTTTCGGGAAACCCTGGCCTCTGCGGGGAGATTGTTCACCGAGAGTGTGGCTCGCGCTCCCGCTTCTTCGGCCCCGCCACGTCCACCTCCACGGCGCCGTTGAGTCAGAGCGAACAGTCTCAGGGTATTTTGGTTGTGCCTGCTTCCGCCCAAACAAAGCGTCATCGAAAGACTGGGCTGCTGGTTGTGGGCTTTGTTGTGGCGGGTGTTCTTGTGAGTGTTTTTGTTGTGTCTGTGGTTTCGCTTGTGAGGAGGAGGCAGGCGGCGGCGGGGAAAGCGGTTGTTGCGGAGGGGGGTGAGGTGGAGGGGGTTGTGGAGGAGGAGGAGAGGGAGGTGAAGGTGAGGAGGATGGAGGAGGCGCACAGGAGTGGGAAACTTGTGTTCTGCTGCGGGGAGGTGCAGCAGTATACGCTGGAGATGCTGATGCGGGCTTCGGCGGAGTTGCTGGGGAGGGGGAGCGTGGGGACGACGTACAAGGCGGTGCTGGATTCGCGGTTGATTGTGACGGTGAAGAGGTTGGATGGGGGGAAGAGTGGGGGGAGTGATGGAGTAGTGTTTGAGCGCCACATGGAGGCTGTGGGGAGGCTTCGCCACCCCAATTTGGTTCCTTTGAGGGCTTATTTTCAGGCCAAGGGAGAGAGGCTTGTCATATATGATTATCAGCCCAATGGCAGCATCTTCAACCTCGTTCACGGTGCTGCATGTGCAGGTTCAAGATCGGCGAGGGCGAAGCCTTTGCATTGGACATCATGCTTGAAAATAGCCGAAGATGTGGCACACGGACTTGCTTATATACATCAAGTTTCAACTCTAATTCATGGCAACCTGAAATCTTCTAACGTTCTTCTTGGGACGGGCTTTGAAGCCTGTATTACGGACTATTGTTTGTCCCTCTTTGCAGATTCTTCGTTCACTGAAGATCCCGATTCTGCGGCTTATAGAGCACCCGAGGCTCGCAACTCTAGCGGCAGAGCCACATCCAAGTCTGATGTTTATGCTTTTGGAGTGCTTCTACTAGAGCTTTTGACCGGTAAACACCCTTCCCAACAACCTTTTCTTGCACCAGCGGATTTGCAAGATTGGGTGAGAACAATGAGAGATGATGATGGCAGTGAAGACAACCGGCTAGAGATGCTCACGGAGGTTGCCAGTATTTGCAGTGCAACCTCGCCGGAGCAGAGGCCAGCAATGTGGCAAGTCCTTAAGATGATACAGGGAATAAAGGACAGCGTTTCGATGGAGGATAATTCATTTACCGGGCTCTCTTAG 1914 0.5564 MQRATAALLPLLLHIISLATTCGGSTVSSDAVWLLSFKREADQDNRLLYTLNEPYDYCEWEGVKCAQGRVVRFVVQSMGLRGPFPPDTLTKLDQLRVMSLRNNSLYGPIPDLSSLTNLKALFLDHNNFSGSFPPSLLLLHRILTLSLSHNNLSGSIPVRLTLLDRLIALRLDSNNFSGTLPPLNQTALKLLNVSNNNLTGPVPVTPTLSKLNAASFSGNPGLCGEIVHRECGSRSRFFGPATSTSTAPLSQSEQSQGILVVPASAQTKRHRKTGLLVVGFVVAGVLVSVFVVSVVSLVRRRQAAAGKAVVAEGGEVEGVVEEEEREVKVRRMEEAHRSGKLVFCCGEVQQYTLEMLMRASAELLGRGSVGTTYKAVLDSRLIVTVKRLDGGKSGGSDGVVFERHMEAVGRLRHPNLVPLRAYFQAKGERLVIYDYQPNGSIFNLVHGAACAGSRSARAKPLHWTSCLKIAEDVAHGLAYIHQVSTLIHGNLKSSNVLLGTGFEACITDYCLSLFADSSFTEDPDSAAYRAPEARNSSGRATSKSDVYAFGVLLLELLTGKHPSQQPFLAPADLQDWVRTMRDDDGSEDNRLEMLTEVASICSATSPEQRPAMWQVLKMIQGIKDSVSMEDNSFTGLS 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1866g00001 637 Pfam Protein kinase domain 361 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1866g00001 637 FunFam Leucine-rich repeat receptor-like protein kinase 141 233 - -
Vium1866g00001 637 SUPERFAMILY Protein kinase-like (PK-like) 362 623 IPR011009 -
Vium1866g00001 637 Gene3D Ribonuclease Inhibitor 186 233 IPR032675 -
Vium1866g00001 637 FunFam Probable inactive receptor kinase At5g67200 29 139 - -
Vium1866g00001 637 Gene3D Phosphorylase Kinase; domain 1 320 435 - -
Vium1866g00001 637 SUPERFAMILY L domain-like 26 224 - -
Vium1866g00001 637 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 625 IPR046959 -
Vium1866g00001 637 Gene3D Transferase(Phosphotransferase) domain 1 437 634 - -
Vium1866g00001 637 ProSiteProfiles Protein kinase domain profile. 358 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1866g00001 637 Gene3D Ribonuclease Inhibitor 27 185 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1866g00001 Vium-Chr1866 11246 14791 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1866g00001 19 631 Receptor kinase-like Gene Family AT3G50230 53.178 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium1866g00001 Pkinase 7.6e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1866g00001 - - gmx:100783086 913.679