Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1865g00010 ATGCTGTTGGCCTTAGTGGAATTACCAACTTCACTTGATAAAAGCCCATTGACGAATCAAACAGAGCTGCATAGGTTGCAATTACAGAAGGTTCAATCATCAAATCCTGACAATATATTAATTGGTAATACAGATAACCAGGAGGAGTCTGCCATGGCCGATGCCAGTCCCAGGACTGATATTTCTACAGATGTTGACACTGACGACAAGAATCAGCCGTTTGATAGAAATCAATCCCTTGCTATTGTTTCTGACTCTAGTGACAGATCAAAAGATAAATCAGATCAGAAGACTCTCCGCAGGCTTGCCCAGAACCGTGAAGCTGCAAGAAAAAGCCGTTTGAGAAAGAAAGCTTATGTCCAACAGTTAGAAAGCAGTCGCTTGAAGCTGACCCAACTAGAGCAAGAGCTTCAGCGAGCTAGACAGCAGGGGATCTTCATATCAAGCTCGGGTGATCAAGCACATACACTAAGTGGAAATGGGGCAATGCAATTTGATGCAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATAAATGAGCTAAGAGCAGCTGTAAATTCTCATGCAAGTGACACTGAACTGCGCATGATTGTTGATGGTATATTGGCGCATTATGATGAAATTTTTAGGTTGAAGGGTGTTGCAGCCAAGGCTGATGTTTTCCATCTGTTGTCTGGTATGTGGAAAACGCCTGCTGAGAGGTGCTTTTTGTGGCTTGGTGGTTTTCGGTCATCTGAACTCCTCAAGCTGCTGGCAAATCAATTGGAACCTCTGACAGAACAGCAGCTGATGGGTATCACCAACTTGCAGCAATCTTCCCAACAGGCAGAAGATGCATTGTCTCAGGGTATGGAAGCATTGCAACAGTCCCTTGCGGAGACCTTGTCCACTGGAGCACCTGCCTCATCTGGTTCGTCAGGGAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAGCTAGGGACACTTGAAGGATTCATTCGACAGGCCGATAATCTTCGCCAGCAGACTCTTCAACAAATGCACCGAATTCTGACGACTCGCCAATCGGCTCGAGCCCTCCTTGCCATACACGACTATTTTTCGCGGCTGCGTGCTCTCAGTTCACTCTGGCTGGCTCGCCCAAGAGATTGA 1149 0.4648 MLLALVELPTSLDKSPLTNQTELHRLQLQKVQSSNPDNILIGNTDNQEESAMADASPRTDISTDVDTDDKNQPFDRNQSLAIVSDSSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHTLSGNGAMQFDAEYARWLEEQNRQINELRAAVNSHASDTELRMIVDGILAHYDEIFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLANQLEPLTEQQLMGITNLQQSSQQAEDALSQGMEALQQSLAETLSTGAPASSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1865g00010 382 Gene3D - 96 148 - -
Vium1865g00010 382 FunFam BZIP family transcription factor 96 145 - -
Vium1865g00010 382 Coils Coil 116 143 - -
Vium1865g00010 382 SMART brlzneu 93 156 IPR004827 GO:0003700|GO:0006355
Vium1865g00010 382 PANTHER TRANSCRIPTION FACTOR TGA9 41 381 - -
Vium1865g00010 382 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 95 139 IPR004827 GO:0003700|GO:0006355
Vium1865g00010 382 MobiDBLite consensus disorder prediction 34 57 - -
Vium1865g00010 382 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 100 115 IPR004827 GO:0003700|GO:0006355
Vium1865g00010 382 Pfam Basic region leucine zipper 93 139 IPR004827 GO:0003700|GO:0006355
Vium1865g00010 382 MobiDBLite consensus disorder prediction 34 99 - -
Vium1865g00010 382 SUPERFAMILY Leucine zipper domain 97 140 IPR046347 GO:0003700|GO:0006355
Vium1865g00010 382 CDD bZIP_HBP1b-like 97 149 - -
Vium1865g00010 382 ProSiteProfiles DOG1 domain profile. 162 379 IPR025422 GO:0006351|GO:0043565
Vium1865g00010 382 Coils Coil 173 193 - -
Vium1865g00010 382 Pfam Seed dormancy control 179 254 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1865g00010 Vium-Chr1865 17872 27802 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1865g00010 52 382 bZIP Transcription Factor Family AT3G12250 80.665 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium1865g00010 DOG1 5.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1865g00010 K14431 - gmx:100101881 669.848