Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1865g00005 ATGGGGAGTAGAACTACCGGGGGTTTTGGTGTTGAAGATGACAAGGGAGCTGAAAGAGGAATGCCGAGCTTCAATTCTGAGTTACCCATTTCCAATTCTAGTTATGCAGAGGGGAGCACAATTGATTCTTTTCGTGTTTCTGACTTTGGTGCATTTGATCAGCCATATCGCGTAGAGGATGCTGTTGGCCTTAGTGGAAACCCAATTTACAACTCACTAAAAGTAAGTAGCCAAACAATTTATCCGGGTTCTGTTCCCATTCATAGCCTTGATCAGTTACCAACTTCACTTGATAAAAGCCCATTGACGAATCAAACAGAGCTGCATAGGTTGCAATTACAGAAGGTTCAATCATCAAATCCTGACAATATATTAATTGGTAATACAGATAACCAGGAGGAGTCTGCCATGGCCGATGCCAGTCCCAGGACTGATATTTCTACAGATGTTGACACTGACGACAAGAATCAGCCGTTTGATAGAAATCAATCCCTTGCTATTGTTTCTGACTCTAGTGACAGATCAAAAGATAAATCAGATCAGAAGACTCTCCGCAGGCTTGCCCAGAACCGTGAAGCTGCAAGAAAAAGCCGTTTGAGAAAGAAAGCTTATGTCCAACAGTTAGAAAGCAGTCGCTTGAAGCTGACCCAACTAGAGCAAGAGCTTCAGCGAGCTAGACAGCAGGGGATCTTCATATCAAGCTCGGGTGATCAAGCACATACACTAAGTGGAAATGGGGCAATGCAATTTGATGCAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATAAATGAGCTAAGAGCAGCTGTAAATTCTCATGCAAGTGACACTGAACTGCGCATGATTGTTGATGGTATATTGGCGCATTATGATGAAATTTTTAGGTTGAAGGGTGTTGCAGCCAAGGCTGATGTTTTCCATCTGTTGTCTGGTATGTGGAAAACGCCTGCTGAGAGGTGCTTTTTGTGGCTTGGTGGTTTTCGGTCATCTGAACTCCTCAAGCTGCTGGCAAATCAATTGGAACCTCTGACAGAACAGCAGCTGATGGGTATCACCAACTTGCAGCAATCTTCCCAACAGGCAGAAGATGCATTGTCTCAGGGTATGGAAGCATTGCAACAGTCCCTTGCGGAGACCTTGTCCACTGGAGCACCTGCCTCATCTGGTTCGTCAGGGAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAGCTAGGGACACTTGAAGGATTCATTCGACAGGCCGATAATCTTCGCCAGCAGACTCTTCAACAAATGCACCGAATTCTGACGACTCGCCAATCGGCTCGAGCCCTCCTTGCCATACACGACTATTTTTCGCGGCTGCGTGCTCTCAGTTCACTCTGGCTGGCTCGCCCAAGAGATTGA 1404 0.4594 MGSRTTGGFGVEDDKGAERGMPSFNSELPISNSSYAEGSTIDSFRVSDFGAFDQPYRVEDAVGLSGNPIYNSLKVSSQTIYPGSVPIHSLDQLPTSLDKSPLTNQTELHRLQLQKVQSSNPDNILIGNTDNQEESAMADASPRTDISTDVDTDDKNQPFDRNQSLAIVSDSSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHTLSGNGAMQFDAEYARWLEEQNRQINELRAAVNSHASDTELRMIVDGILAHYDEIFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLANQLEPLTEQQLMGITNLQQSSQQAEDALSQGMEALQQSLAETLSTGAPASSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1865g00005 467 Coils Coil 201 228 - -
Vium1865g00005 467 Coils Coil 258 278 - -
Vium1865g00005 467 Pfam Seed dormancy control 264 339 IPR025422 GO:0006351|GO:0043565
Vium1865g00005 467 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 180 224 IPR004827 GO:0003700|GO:0006355
Vium1865g00005 467 Pfam Basic region leucine zipper 178 224 IPR004827 GO:0003700|GO:0006355
Vium1865g00005 467 SMART brlzneu 178 241 IPR004827 GO:0003700|GO:0006355
Vium1865g00005 467 PANTHER TRANSCRIPTION FACTOR TGA9 119 466 - -
Vium1865g00005 467 CDD bZIP_HBP1b-like 182 234 - -
Vium1865g00005 467 ProSiteProfiles DOG1 domain profile. 247 464 IPR025422 GO:0006351|GO:0043565
Vium1865g00005 467 MobiDBLite consensus disorder prediction 1 33 - -
Vium1865g00005 467 SUPERFAMILY Leucine zipper domain 182 225 IPR046347 GO:0003700|GO:0006355
Vium1865g00005 467 FunFam BZIP family transcription factor 181 230 - -
Vium1865g00005 467 Gene3D - 181 232 - -
Vium1865g00005 467 MobiDBLite consensus disorder prediction 114 184 - -
Vium1865g00005 467 MobiDBLite consensus disorder prediction 114 142 - -
Vium1865g00005 467 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 185 200 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1865g00005 Vium-Chr1865 17872 28665 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1865g00005 137 467 bZIP Transcription Factor Family AT3G12250 80.060 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium1865g00005 DOG1 7.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1865g00005 K14431 - gmx:100101881 803.127