Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1865g00004 ATGGGGAGTAGAACTACCGGGGGTTTTGGTGTTGAAGATGACAAGGGAGCTGAAAGAGGAATGCCGAGCTTCAATTCTGAGTTACCCATTTCCAATTCTAGTTATGCAGAGGGGAGCACAATTGATTCTTTTCGTGTTTCTGACTTTGGTGCATTTGATCAGCCATATCGCGTAGAGGATGCTGTTGGCCTTAGTGGAAATAACCAGGAGGAGTCTGCCATGGCCGATGCCAGTCCCAGGACTGATATTTCTACAGATGTTGACACTGACGACAAGAATCAGCCGTTTGATAGAAATCAATCCCTTGCTATTGTTTCTGACTCTAGTGACAGATCAAAAGATAAATCAGATCAGAAGACTCTCCGCAGGCTTGCCCAGAACCGTGAAGCTGCAAGAAAAAGCCGTTTGAGAAAGAAAGCTTATGTCCAACAGTTAGAAAGCAGTCGCTTGAAGCTGACCCAACTAGAGCAAGAGCTTCAGCGAGCTAGACAGCAGGGGATCTTCATATCAAGCTCGGGTGATCAAGCACATACACTAAGTGGAAATGGGGCAATGCAATTTGATGCAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATAAATGAGCTAAGAGCAGCTGTAAATTCTCATGCAAGTGACACTGAACTGCGCATGATTGTTGATGGTATATTGGCGCATTATGATGAAATTTTTAGGTTGAAGGGTGTTGCAGCCAAGGCTGATGTTTTCCATCTGTTGTCTGGTATGTGGAAAACGCCTGCTGAGAGGTGCTTTTTGTGGCTTGGTGGTTTTCGGTCATCTGAACTCCTCAAGCTGCTGGCAAATCAATTGGAACCTCTGACAGAACAGCAGCTGATGGGTATCACCAACTTGCAGCAATCTTCCCAACAGGCAGAAGATGCATTGTCTCAGGGTATGGAAGCATTGCAACAGTCCCTTGCGGAGACCTTGTCCACTGGAGCACCTGCCTCATCTGGTTCGTCAGGGAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAGCTAGGGACACTTGAAGGATTCATTCGACAGGCCGATAATCTTCGCCAGCAGACTCTTCAACAAATGCACCGAATTCTGACGACTCGCCAATCGGCTCGAGCCCTCCTTGCCATACACGACTATTTTTCGCGGCTGCGTGCTCTCAGTTCACTCTGGCTGGCTCGCCCAAGAGATTGA 1215 0.4741 MGSRTTGGFGVEDDKGAERGMPSFNSELPISNSSYAEGSTIDSFRVSDFGAFDQPYRVEDAVGLSGNNQEESAMADASPRTDISTDVDTDDKNQPFDRNQSLAIVSDSSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHTLSGNGAMQFDAEYARWLEEQNRQINELRAAVNSHASDTELRMIVDGILAHYDEIFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLANQLEPLTEQQLMGITNLQQSSQQAEDALSQGMEALQQSLAETLSTGAPASSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1865g00004 404 SMART brlzneu 115 178 IPR004827 GO:0003700|GO:0006355
Vium1865g00004 404 CDD bZIP_HBP1b-like 119 171 - -
Vium1865g00004 404 Gene3D - 118 170 - -
Vium1865g00004 404 PANTHER TRANSCRIPTION FACTOR TGA9 69 403 - -
Vium1865g00004 404 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 117 161 IPR004827 GO:0003700|GO:0006355
Vium1865g00004 404 Coils Coil 195 215 - -
Vium1865g00004 404 MobiDBLite consensus disorder prediction 67 121 - -
Vium1865g00004 404 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 122 137 IPR004827 GO:0003700|GO:0006355
Vium1865g00004 404 Pfam Basic region leucine zipper 115 161 IPR004827 GO:0003700|GO:0006355
Vium1865g00004 404 Coils Coil 138 165 - -
Vium1865g00004 404 FunFam BZIP family transcription factor 118 167 - -
Vium1865g00004 404 ProSiteProfiles DOG1 domain profile. 184 401 IPR025422 GO:0006351|GO:0043565
Vium1865g00004 404 Pfam Seed dormancy control 201 276 IPR025422 GO:0006351|GO:0043565
Vium1865g00004 404 MobiDBLite consensus disorder prediction 1 35 - -
Vium1865g00004 404 SUPERFAMILY Leucine zipper domain 119 162 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1865g00004 Vium-Chr1865 17872 28666 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1865g00004 74 404 bZIP Transcription Factor Family AT3G12250 80.060 0.0 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium1865g00004 DOG1 5.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1865g00004 K14431 - gmx:100101881 637.106