Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1865g00001 ATGGCTGCTTCGGTGGCAGGGAACGCGACCACGAACACGAACGCGGGTGTGGAGTGGCACGTGCGTCCTCCAAACCCTAAGAACCCAATCGTCTTCTTCGATGTCACCATCGGCAACATACCTGCTGGTCGAATCAAGATGGAACTCTTCGCCGACATTGCGCCCAAAACCGCCGAGAATTTCAGGCAGTTCTGCACTGGGGAGTACAGAAAAGCTGGACTTCCGGTTGGTTACAAGGGTTGTCAATTTCATAGAGTGATTAAGGATTTTATGATTCAAGCTGGCGATTTTGTAAAGGGTGATGGTAGTGGATGTGTTTCAATTTATGGACTTAAGCTTGATGATGAAAACTTTATTGCCAAACACACTGGCCCCGGCCTTCTGTCGATGGCAAATAGTGGACCAAATACCAATGGTTGTCAGTTTTTTATAACATGTGCAAAATGCGACTGGCTTGACAACAAGCATGTCGTTTTCGGGAGAGTGCTTGGAGATGGCCTTTTGGTTGTAAGGAAGATTGAGAACGTGGCAACTGGACCCAATAACCGGCCAAAATTAGCTTGCGTCATTGCAGAATGTGGTGAAATGTAA 591 0.4721 MAASVAGNATTNTNAGVEWHVRPPNPKNPIVFFDVTIGNIPAGRIKMELFADIAPKTAENFRQFCTGEYRKAGLPVGYKGCQFHRVIKDFMIQAGDFVKGDGSGCVSIYGLKLDDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVIAECGEM 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1865g00001 196 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 49 64 IPR002130 GO:0000413|GO:0003755
Vium1865g00001 196 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 141 153 IPR002130 GO:0000413|GO:0003755
Vium1865g00001 196 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Vium1865g00001 196 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 154 169 IPR002130 GO:0000413|GO:0003755
Vium1865g00001 196 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 83 95 IPR002130 GO:0000413|GO:0003755
Vium1865g00001 196 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 31 196 - -
Vium1865g00001 196 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 32 195 IPR002130 GO:0000413|GO:0003755
Vium1865g00001 196 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 78 95 IPR020892 GO:0003755|GO:0006457
Vium1865g00001 196 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 33 194 IPR002130 GO:0000413|GO:0003755
Vium1865g00001 196 FunFam Peptidyl-prolyl cis-trans isomerase 18 196 - -
Vium1865g00001 196 CDD cyclophilin_ABH_like 29 194 - -
Vium1865g00001 196 Gene3D - 18 196 IPR029000 -
Vium1865g00001 196 PIRSF Peptidylpro_ismrse 7 196 IPR024936 GO:0003755
Vium1865g00001 196 SUPERFAMILY Cyclophilin-like 19 196 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1865g00001 Vium-Chr1865 495 12113 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1865g00001 25 194 U-box Gene Family AT5G67530 41.860 1.91e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1865g00001 K09567 - gmx:100813835 385.185