Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1864g00001 ATGACCCTATTGAGACTCATTTTGCTCTTATGTTTCCTACTTACTCATTTTCATCACATCCTATGTGACAGTAACACAGACAGAGAAGCCCTTCTTTCTTTCAAATCTCAAGTCACTGACCCTAAAAATGCTCTCTCTGGGTGGTCCACACACTCCAATCACTGCACCTGGTATGGTGTCACATGCTCCAAAGTTGGAAACAGGGTCCAATATCTTAATCTACGAGGACTTTCCCTCTCTGGCAAACTCTCCCCTCACCTTTCCAACCTCACTTTCCTACACTCACTCGACCTTTCCAACAATACTTTTCATGGCCAAATTCCTCAATCATTTGGCAATCTCTCTCTTCTCAGTACCATTCTATTATCTTCCAACAATCTCAGTGGTACTATTCCACCACAACTGGGTTATCTCCACCGTCTACAAAGTTTAGACTTTTCTGTCAATAATCTCACTGGTCAGATTCCTCCATCATTTGCCAATCTCTCTTCTCTTCAGAATCTTTCCTTGGCAAGAAACCATTTGGAGGGGGAGATTCCAACTGAACTTGGTAATCTCCGCAATCTTTCCTTTCTTCAAATCTCAGAAAACCATTTCTCTGGCAAGTTTCCCACTTCTATCTTCAACATGTCTTCCTTAGTCTTTTTATCCGTGACAGAAAACAATCTTACAGGTGAGTTACCACAAAATTTTGGCCATTTTCTTCCAAATTTAAAGATTCTATACCTGGCAACTAATATGTTTGAAGGAGTAATTCCGAATTCCATATCCAATGCCTCACATCTTCAAGAGATTGACTTTGCCAACAATATGTTTACTGGGCCCATACCTCTATTCTGCAACTTAAAAAACCTTACCCGCCTCATTCTTGGTAATAATTTTCTCTCTTCCACAACTTCGTTAAATTTTCAGTTCTTTGATTGCCTTAGAAACTCTACCAAGTTGCAGGAACTCCGGATCTATGGAAACCACTTGACTGGGGAGCTTCCAAAATCTTTTGCTAATCTGTCATCAAATCTCCAACATTTATGTGTTGCTGATAACTCTTTTTTTGGCAGCATTCCTCAAGGAATGAAGAAATTTGAAAATATCATATCCTTGTCCTTTGAATATAATTTTTTCACTGGGGAGTTACCATCAGAAATAGGAGCACTAAACAATCTACAGCAACTTGTGATAAACAACAACAGATTGTCTGGGCACATTCCAGACACTTTTGGCAATCTAACAAATCTGTTTAACCTTGCAATGGGAAATAACCAACTCTCGGGTAGAATACAACAAAGTATTGGACAATGCAAGAGATTAAATTATCTTTACATGAATATGAATAGATTTGGTGGGACCTTACCAGATGAGATTTTTCAACTTCCTAGCTTAATTACGTTGTATTTAGCAGGAAACTCTCTGCAGGGTCCGCTACCTCCTATGGTGGGCACCATGAAACAGCTTGAGACCATGGATATTTCTGACAACCAGTTGTCAGGGAACATTCCTGTGGAAATAGGGGGGTGTTTGAGCTTGAAGTCGCTAACGATGGCAAGAAACAAATTCAATGGTTCGATCCCCACAAAAATTGGGAATTTAGCATCCCTTGAGACTTTGGATTTATCATTAAACAGTCTCACTGGTGCTATTCCTGAAAGTTTAGGACAGCTCGAGTATATACAGAAATTAAATTTGTCTTTCAACCATTTGGAAGGGGAGGTTCCTATGAAAGGTCTTTTTACGAACCTTACCAAATTTGATCTTCGAGGTAACAATCAACTCTGTAGCCTTAACAAGGAAATTGTCCAGAATTTTGGAGTACTCTTGTGTGCTGTTGGCAAAAAGAAAAGAAAGATTTTACTGCCTATCATTCTTGCAGTCGTTGGTGCTGTTGCTTTGTTCATTTCAACGCTCTTTCTATTTTGGACAATGACGTCTGGAGATAAGAAAAGAAAAGAAGGGAAAACTAGTGTGTCATCTGCCCCTCTTAAAGGGCTGCCTCAAAATATTTCTTACGGCGATATTCTCACTGCCACAAACAACTTTGCAGCTGAAAACTTGATCGGAAAAGGAGGCTTTGGTTCTGTGTATAAGGGTGTGTTCAGGTTCAGCACTGGGGAAACCGCCACTCTTGCTGTCAAAGTCCTGGACCTGCAGCAAAGCAGAGCTTCCAAGAGTTTCGTTGCTGAGTGCGAAGCTTTGAAAAATGTCAGGCATCGGAACCTAGTAAAGGTTATCACTTCTTGCTCCAGCCTTGATTATAAAGGAGAGGAATTTAAGGCCCTTGTCATGCAATTCATGCCCAATGGCAACTTGGACATGAAAATACACCCGGAAGATGAAGAGTCGGGATCTTTTCTAACCTTGATGCAAAGACTGAACATTGCCATTGATGTTGCTTGTGCTATGGAGTACTTGCACCATGGCTGCGACCCACCGATAGTTCATTGTGATCTGAAACCTGCCAATGTCCTTCTCGATGAAAATATGGTGGCACATATTGCAGATTTTGGATTAGCAAGGTTTCTCTCCCAAAATACATCAGAGAAGCAAAGCACTCTAGGGCTGAAAGGATCAATCGGCTACATTGCCCCAGAATATGGTCAAGGAGGCAAGGCTTCAACTGAGGGCGATGTGTACAGCTTTGGGACTCTTCTGTTAGAGATGTTTACGGCCAAAAAACCAACTGATGAAATATTCAAAGAAGGATTGAGCGTAAGCAAATTTTTGTCAGCCATGGATGAGAATGAAATGCTGAAAGTCGTTGATAGAAGGCTTATTGATGGTTATGGATATTGGAAACAAAGCTCAAGCAGTGAGGATTATAGCGATGAACTTAACGGAAAAACAGATTGGATGCATAATGCGGAGGAGTGCATAGCTGATGTGATAAGACTTGGGTTTTGTTGCATGGCTGATCAACCCAAAGAACGATGGAGCATGAGAGACGCCTCATCAAAATTGCAAACAATTAAGCACTCTATGCTGCCCTTTCAACTTTAG 2991 0.4089 MTLLRLILLLCFLLTHFHHILCDSNTDREALLSFKSQVTDPKNALSGWSTHSNHCTWYGVTCSKVGNRVQYLNLRGLSLSGKLSPHLSNLTFLHSLDLSNNTFHGQIPQSFGNLSLLSTILLSSNNLSGTIPPQLGYLHRLQSLDFSVNNLTGQIPPSFANLSSLQNLSLARNHLEGEIPTELGNLRNLSFLQISENHFSGKFPTSIFNMSSLVFLSVTENNLTGELPQNFGHFLPNLKILYLATNMFEGVIPNSISNASHLQEIDFANNMFTGPIPLFCNLKNLTRLILGNNFLSSTTSLNFQFFDCLRNSTKLQELRIYGNHLTGELPKSFANLSSNLQHLCVADNSFFGSIPQGMKKFENIISLSFEYNFFTGELPSEIGALNNLQQLVINNNRLSGHIPDTFGNLTNLFNLAMGNNQLSGRIQQSIGQCKRLNYLYMNMNRFGGTLPDEIFQLPSLITLYLAGNSLQGPLPPMVGTMKQLETMDISDNQLSGNIPVEIGGCLSLKSLTMARNKFNGSIPTKIGNLASLETLDLSLNSLTGAIPESLGQLEYIQKLNLSFNHLEGEVPMKGLFTNLTKFDLRGNNQLCSLNKEIVQNFGVLLCAVGKKKRKILLPIILAVVGAVALFISTLFLFWTMTSGDKKRKEGKTSVSSAPLKGLPQNISYGDILTATNNFAAENLIGKGGFGSVYKGVFRFSTGETATLAVKVLDLQQSRASKSFVAECEALKNVRHRNLVKVITSCSSLDYKGEEFKALVMQFMPNGNLDMKIHPEDEESGSFLTLMQRLNIAIDVACAMEYLHHGCDPPIVHCDLKPANVLLDENMVAHIADFGLARFLSQNTSEKQSTLGLKGSIGYIAPEYGQGGKASTEGDVYSFGTLLLEMFTAKKPTDEIFKEGLSVSKFLSAMDENEMLKVVDRRLIDGYGYWKQSSSSEDYSDELNGKTDWMHNAEECIADVIRLGFCCMADQPKERWSMRDASSKLQTIKHSMLPFQL 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1864g00001 996 SUPERFAMILY L domain-like 339 594 - -
Vium1864g00001 996 Pfam Protein tyrosine and serine/threonine kinase 681 981 IPR001245 GO:0004672|GO:0006468
Vium1864g00001 996 SMART serkin_6 678 992 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1864g00001 996 Gene3D Ribonuclease Inhibitor 23 178 IPR032675 -
Vium1864g00001 996 Gene3D Ribonuclease Inhibitor 179 279 IPR032675 -
Vium1864g00001 996 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Vium1864g00001 996 SMART LRR_typ_2 138 161 IPR003591 -
Vium1864g00001 996 SMART LRR_typ_2 235 258 IPR003591 -
Vium1864g00001 996 SMART LRR_typ_2 210 233 IPR003591 -
Vium1864g00001 996 SMART LRR_typ_2 457 481 IPR003591 -
Vium1864g00001 996 SMART LRR_typ_2 385 408 IPR003591 -
Vium1864g00001 996 SMART LRR_typ_2 409 433 IPR003591 -
Vium1864g00001 996 SMART LRR_typ_2 162 186 IPR003591 -
Vium1864g00001 996 SMART LRR_typ_2 282 308 IPR003591 -
Vium1864g00001 996 SMART LRR_typ_2 90 113 IPR003591 -
Vium1864g00001 996 SMART LRR_typ_2 529 553 IPR003591 -
Vium1864g00001 996 FunFam LRR receptor-like serine/threonine-protein kinase EFR 649 762 - -
Vium1864g00001 996 Pfam Leucine rich repeat 507 566 IPR001611 GO:0005515
Vium1864g00001 996 Pfam Leucine rich repeat 387 446 IPR001611 GO:0005515
Vium1864g00001 996 FunFam Leucine-rich repeat protein kinase family protein 158 299 - -
Vium1864g00001 996 ProSitePatterns Serine/Threonine protein kinases active-site signature. 810 822 IPR008271 GO:0004672|GO:0006468
Vium1864g00001 996 Pfam Leucine Rich Repeat 314 336 IPR001611 GO:0005515
Vium1864g00001 996 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515
Vium1864g00001 996 SUPERFAMILY L domain-like 25 309 - -
Vium1864g00001 996 PANTHER OS04G0122200 PROTEIN 184 988 - -
Vium1864g00001 996 Gene3D Ribonuclease Inhibitor 280 599 IPR032675 -
Vium1864g00001 996 Gene3D Transferase(Phosphotransferase) domain 1 763 992 - -
Vium1864g00001 996 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 763 994 - -
Vium1864g00001 996 ProSiteProfiles Protein kinase domain profile. 678 992 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1864g00001 996 FunFam Leucine-rich repeat receptor-like kinase 27 138 - -
Vium1864g00001 996 Gene3D Phosphorylase Kinase; domain 1 660 762 - -
Vium1864g00001 996 ProSitePatterns Protein kinases ATP-binding region signature. 684 710 IPR017441 GO:0005524
Vium1864g00001 996 FunFam LRR receptor-like serine/threonine-protein kinase EFR 301 611 - -
Vium1864g00001 996 SUPERFAMILY Protein kinase-like (PK-like) 655 984 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1864g00001 Vium-Chr1864 8997 12201 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1864g00001 26 989 Receptor kinase-like Gene Family AT3G47570 40.278 0.0 705
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vium1864g00001 PK_Tyr_Ser-Thr 2.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1864g00001 - - gmx:100776054 1442.56