Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1862g00010 ATGGAGCTTCAACTTGGTCTTGCTCTCTCAACCAATCAATCTCAATCACTTGACCTCAATTCTCATGCTTACGATTCTATCTTCCATCAAAATAATTTCAATAAAAAACGTACCTTCTTCCAACTCTTTGATCATGCACCACAAACTCTCCACACCGACCTTGTACTTCCCACGCTGTCTCTCCTTCCTTTGACGCCAAGCCACCATCAAGATGATCACGATCAACACAGCCAATGCTCTAGCATCACCAAAAAGGATGAAGAGGATGCCGAAGATATTGTGGGTTGGCCACCGGTAAACTATTGGAGAAAGAAACTTCGTGTCGATAACATTGGAGACCGTGACGAGGTTGTAGGAAAAAACAATCACGTGGTATGGGTTGACCGGTGTCACGGCCATGGTTGTTTGACCACGGGAAGATCCAATTCTTCAAAGTCTCTGTATGTGAAGGTGAAGATGGAGGGTGTTGGAATTGCACGGAAGGTTGAACTTGGCATGCACCAATCCTTTAAGACGCTGACGGAAACCTTGATGGACATGTTTGGAACAGGCCATCAAGAATCAAACAGCTATGAATTGGCTTATCAGGATAAAGAAGGTGACTGGCTTCTGGCACAAGATGTACCTTGGAGGAGTTTTGTTGGATGTGCACAAAGACTGAAATTGATGAAGAAGAGTAACAGATGA 687 0.4425 MELQLGLALSTNQSQSLDLNSHAYDSIFHQNNFNKKRTFFQLFDHAPQTLHTDLVLPTLSLLPLTPSHHQDDHDQHSQCSSITKKDEEDAEDIVGWPPVNYWRKKLRVDNIGDRDEVVGKNNHVVWVDRCHGHGCLTTGRSNSSKSLYVKVKMEGVGIARKVELGMHQSFKTLTETLMDMFGTGHQESNSYELAYQDKEGDWLLAQDVPWRSFVGCAQRLKLMKKSNR 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1862g00010 228 SUPERFAMILY CAD & PB1 domains 141 224 - -
Vium1862g00010 228 MobiDBLite consensus disorder prediction 66 90 - -
Vium1862g00010 228 ProSiteProfiles PB1 domain profile. 146 228 IPR000270 GO:0005515
Vium1862g00010 228 Gene3D - 140 228 - -
Vium1862g00010 228 MobiDBLite consensus disorder prediction 67 90 - -
Vium1862g00010 228 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 227 IPR003311 GO:0005634|GO:0006355
Vium1862g00010 228 Pfam AUX/IAA family 2 182 IPR033389 -
Vium1862g00010 228 Pfam AUX/IAA family 188 227 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1862g00010 Vium-Chr1862 113672 115027 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1862g00010 148 226 B3 DNA Binding Superfamily AT5G20730 31.325 4.13e-08 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vium1862g00010 AUX_IAA 1.5e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1862g00010 K14484 - gmx:100808466 235.343