Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1862g00007 ATGAAAGTTGTGAGCATGGAGACAGAGAAGAAGTGCGGTTGCTGGGCTGTCCTTAAACGCGGTGTTAGAGGTGCGTGCAAACCTTCAGCTTCCAGAGACTCTGCTAACACTATCCCTCGTACTAGTCTCGTTTATGATGCAGCAAGCGAAACAAGATACCTGAATGCTAGCAATCGAGAACTTTGTCCTCCCCTCGAAGCTCGATTATCTTCTGATAACCCTGATCCCCCACCCCAGGAGAACAAGGCTGCATGCCAGCTCCTTCAATTTTCATTTCAAGAACTTAAAGCTGCAACTGGAAATTTCAGACCTGATAGCATTCTTGGGGAAGGTGGCTTTGGTTATGTTTTCAAAGGATGGATTGAGGAAGATGGAACCTCGCCAGCTAAACCTGGGTCAGGGATTACAGTGGCTGTCAAAAGCTTGAAGCCAGATGGCCTTCAGGGCCATAGAGAATGGGTGGCTGAAGTTGACTTTCTTGGACAGCTTCACCATTCTAACCTTGTGAAACTTATCGGTTACTGCATTGAAGATGATCAACGGCTTCTTGTTTACGAGTTTATGACCCGTAGAAGTCTAGAAAATCATCTATTCAGAAGAACCGTACCTCTCCCGTGGCCCAACAGGGTTAAGATTGCCCTTGGTGCAGCAAAAGGATTGGCCTTCCTCCACAATGGTCCAGAACCAGTCATTTATAGAGATTTTAAAACATCTAATATTTTGCTGGATACGGAGTATAATGCAAAGCTTTCAGATTTTGGTCTAGCAAAAGCAGGACCTCAAGGAGACAAAACACATGTTTCTACCAGAGTAGTTGGAACTTATGGTTATGCTGCTCCAGAATATGTCATGACAGGGCACTTGACTGCTAAGAGTGATGTTTATAGCTTTGGAGTTGTGTTGCTTGAGATACTAACAGGAAGAAGATCAATGGACAAGAAGCGTCCGAGTGGGGAGCAAAATCTTGTTTCTTGGGCTAGGCCATACTTAGCTGACAAGCGAAAGCTGTACCAGCTTGTGGATCCTCGCCTGGAGCTAAATTATTCTCTAAAAGGAGTGCAGAAGATTTCCCAGTTAGCTTATAGCTGCCTCAGCAGAGACCCTAAATCTCGCCCCAACATGGATGAAGTTGTGAAAGCGCTGACTCCATTGCAGGGGCTTAATGACCTTGCAATTTTGTCTTATCACTCTCGCTTGTCCCAACAAGGGAGACGGAAGAAGAAAGATGGAACTCCACACATCACATACACACAATCCAAGAGCATGAGGGCCTCTCCTTTGAATACCAGCAAGCAGCATCGGTGA 1305 0.4567 MKVVSMETEKKCGCWAVLKRGVRGACKPSASRDSANTIPRTSLVYDAASETRYLNASNRELCPPLEARLSSDNPDPPPQENKAACQLLQFSFQELKAATGNFRPDSILGEGGFGYVFKGWIEEDGTSPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHSNLVKLIGYCIEDDQRLLVYEFMTRRSLENHLFRRTVPLPWPNRVKIALGAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTAKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLADKRKLYQLVDPRLELNYSLKGVQKISQLAYSCLSRDPKSRPNMDEVVKALTPLQGLNDLAILSYHSRLSQQGRRKKKDGTPHITYTQSKSMRASPLNTSKQHR 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1862g00007 434 Pfam Protein tyrosine and serine/threonine kinase 106 381 IPR001245 GO:0004672|GO:0006468
Vium1862g00007 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Vium1862g00007 434 FunFam Probable serine/threonine-protein kinase PBL8 188 401 - -
Vium1862g00007 434 PANTHER OS01G0588500 PROTEIN-RELATED 71 385 - -
Vium1862g00007 434 CDD STKc_IRAK 108 384 - -
Vium1862g00007 434 Gene3D Transferase(Phosphotransferase) domain 1 188 394 - -
Vium1862g00007 434 MobiDBLite consensus disorder prediction 414 434 - -
Vium1862g00007 434 FunFam Serine/threonine-protein kinase BIK1 70 187 - -
Vium1862g00007 434 ProSiteProfiles Protein kinase domain profile. 102 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1862g00007 434 SUPERFAMILY Protein kinase-like (PK-like) 86 382 IPR011009 -
Vium1862g00007 434 ProSitePatterns Protein kinases ATP-binding region signature. 108 140 IPR017441 GO:0005524
Vium1862g00007 434 Gene3D Phosphorylase Kinase; domain 1 78 187 - -
Vium1862g00007 434 MobiDBLite consensus disorder prediction 398 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1862g00007 Vium-Chr1862 54684 58571 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1862g00007 81 381 Glycoside Hydrolase AT3G07070 55.082 6.95e-110 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium1862g00007 PK_Tyr_Ser-Thr 3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1862g00007 - - aprc:113848012 844.728