Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1862g00006 ATGAAAGTTGTGAGCATGGAGACAGAGAAGAAGTGCGGTTGCTGGGCTGTCCTTAAACGCGGTGTTAGAGCAAGCGAAACAAGATACCTGAATGCTAGCAATCGAGAACTTTGTCCTCCCCTCGAAGCTCGATTATCTTCTGATAACCCTGATCCCCCACCCCAGGAGAACAAGGCTGCATGCCAGCTCCTTCAATTTTCATTTCAAGAACTTAAAGCTGCAACTGGAAATTTCAGACCTGATAGCATTCTTGGGGAAGGTGGCTTTGGTTATGTTTTCAAAGGATGGATTGAGGAAGATGGAACCTCGCCAGCTAAACCTGGGTCAGGGATTACAGTGGCTGTCAAAAGCTTGAAGCCAGATGGCCTTCAGGGCCATAGAGAATGGGTGGCTGAAGTTGACTTTCTTGGACAGCTTCACCATTCTAACCTTGTGAAACTTATCGGTTACTGCATTGAAGATGATCAACGGCTTCTTGTTTACGAGTTTATGACCCGTAGAAGTCTAGAAAATCATCTATTCAGAAGAACCGTACCTCTCCCGTGGCCCAACAGGGTTAAGATTGCCCTTGGTGCAGCAAAAGGATTGGCCTTCCTCCACAATGGTCCAGAACCAGTCATTTATAGAGATTTTAAAACATCTAATATTTTGCTGGATACGGAGTATAATGCAAAGCTTTCAGATTTTGGTCTAGCAAAAGCAGGACCTCAAGGAGACAAAACACATGTTTCTACCAGAGTAGTTGGAACTTATGGTTATGCTGCTCCAGAATATGTCATGACAGGGCACTTGACTGCTAAGAGTGATGTTTATAGCTTTGGAGTTGTGTTGCTTGAGATACTAACAGGAAGAAGATCAATGGACAAGAAGCGTCCGAGTGGGGAGCAAAATCTTGTTTCTTGGGCTAGGCCATACTTAGCTGACAAGCGAAAGCTGTACCAGCTTGTGGATCCTCGCCTGGAGCTAAATTATTCTCTAAAAGGAGTGCAGAAGATTTCCCAGTTAGCTTATAGCTGCCTCAGCAGAGACCCTAAATCTCGCCCCAACATGGATGAAGTTGTGAAAGCGCTGACTCCATTGCAGGGGCTTAATGACCTTGCAATTTTGTCTTATCACTCTCGCTTGTCCCAACAAGGGAGACGGAAGAAGAAAGATGGAACTCCACACATCACATACACACAATCCAAGAGCATGAGGGCCTCTCCTTTGAATACCAGCAAGCAGCATCGGTGA 1233 0.455 MKVVSMETEKKCGCWAVLKRGVRASETRYLNASNRELCPPLEARLSSDNPDPPPQENKAACQLLQFSFQELKAATGNFRPDSILGEGGFGYVFKGWIEEDGTSPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHSNLVKLIGYCIEDDQRLLVYEFMTRRSLENHLFRRTVPLPWPNRVKIALGAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTAKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLADKRKLYQLVDPRLELNYSLKGVQKISQLAYSCLSRDPKSRPNMDEVVKALTPLQGLNDLAILSYHSRLSQQGRRKKKDGTPHITYTQSKSMRASPLNTSKQHR 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1862g00006 410 Pfam Protein tyrosine and serine/threonine kinase 82 357 IPR001245 GO:0004672|GO:0006468
Vium1862g00006 410 SUPERFAMILY Protein kinase-like (PK-like) 62 358 IPR011009 -
Vium1862g00006 410 FunFam Probable serine/threonine-protein kinase PBL8 164 377 - -
Vium1862g00006 410 FunFam Serine/threonine-protein kinase BIK1 46 163 - -
Vium1862g00006 410 Gene3D Phosphorylase Kinase; domain 1 54 163 - -
Vium1862g00006 410 ProSitePatterns Protein kinases ATP-binding region signature. 84 116 IPR017441 GO:0005524
Vium1862g00006 410 ProSiteProfiles Protein kinase domain profile. 78 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1862g00006 410 MobiDBLite consensus disorder prediction 374 410 - -
Vium1862g00006 410 Gene3D Transferase(Phosphotransferase) domain 1 164 370 - -
Vium1862g00006 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Vium1862g00006 410 CDD STKc_IRAK 84 360 - -
Vium1862g00006 410 PANTHER OS01G0588500 PROTEIN-RELATED 59 361 - -
Vium1862g00006 410 MobiDBLite consensus disorder prediction 390 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1862g00006 Vium-Chr1862 54683 58571 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1862g00006 57 357 Glycoside Hydrolase AT3G07070 55.082 5.67e-110 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium1862g00006 PK_Tyr_Ser-Thr 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1862g00006 - - gmx:100305441 786.563