Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1861g00012 ATGGCTTTCCCTCCTTACCGAAGATCCCATTTGCGTAGCAACACTTACCATGCTCTTGTTCACCTACTCTCTCACTTTGCTGAGTACAACTCTTCACATGAAACTTCAACCCAACCCTTCAACATTCCGGATGATGGCATTGGTAGAATGGATAGAGTAAACCAAGAAAAGAGGCCCAAGTGCTCTGAAGTTGTTGATTCTGATTTTCTGAGTCCTACGGATCCTATTAGCCAGAAGGATATGGTGGAGGTTCAGGAGATCATTGAGGGGGTTGGAGACAAGGATACGGATTTTACTTCCAACAAGATTGTCCTAGATGATATAGAACATATGATGGAAATAGAGGACATGCCTACCCCAGTAAATGGGTTTGATAAGGAGCATGAGCTGATGAATGAGTTTGAACTTGTTATGAAAGGAACTGAAGATCTTATTTGTGATAGTGATTTAATTCCCATGAACACTGAATTTGATGTGAAACATAATGATGGCCGTGAAGTTGGGTTGATGGACTTTCAAGTAGACATGGAAGAGGGAGAAATTTCTGGAGACTTGGGAAAGGATGGCAATTCATGTGATGTTCCGTCTGCAGATGCTTTAATTTTACCGCAGAAGCAGGTAGATGACCTTCAGGAGCCTGTAAATGTTACTAGAAATATGATGTATCCTTCTACGATTGTGAACCAAGAAAAGGAGAAAGATTGTGAGCCTACTTCCTCTGCGGTAAATTCTCTTCAAGATGGCAATGATAGTGGACAGGTGGAGCCTATAACTGGTGACAACAAAAGAATTGCATGCAGAGTTGAAGTAGCAATTTCTGAAAAAACTTTTGAATGTAAGAAGGAAGATAAAATGAAGTCGATGAATGCCAGTAAAAGAAATAAGCGTGGTGGAAAGAAAGACAAAAAAAAGGCTTATAGAATGAAGAGAGCAGAAAAGAACAGAGAGCTAGGTGTTAAAAGTTTGCAATTTCAGAAGTTTGTACAGAAACCAAAAGCTGTCTCACATTGTCGGCATTATATTATGGGAAGGTGCTATGAGGGTGACAAATGTCAGTTTTCACATGATGTGGTGCCTCGAACAAAATCCAAGCCATGTGGTCACTTTGCTCATAACTCTTGCATGAAAGGGAATGATTGCCCATTTGATCACGAACTCTCAAAGTATCCTTGTAACAATATTCTATCCCAAGGCTTTTGTAGAAGAGGTGAATCTTGCTTGTTTTCACACCAGGTATCCAAAGAAGATATCCCTTCAAATATCCCTACCCCTTCAAATATGCGCAGACCAGTGTTGTCTACTCTTCAGTCAGGAAATGCAAATTCCAGTACACCAGTTAGCAATAATCATGGCTCTGGTACTATGCAGCAAAATCTCTTAACTCATTCTTCTGGAATTCATTCTCGGGTGAATGTTGAACATAAGGCAGCAAACACTGCACAAAAACAGCCTACACCACCTAAAGGAATCAGTTTCATCAATCTTGCAAAATTCACGCCCAGCCCTTCTGCACAAAAACAAGGCACAGTAACAATCAAGGAAAGTCCTTTACAAACAGGGATGCATGAAGAACAACGTGCATTTAACAAAAGTCAAAACAAGGTGGAGATTGCAAAGAAACTGCCATCTGTGACACCTAAAGGAGTAAACTTTCTTTCTTTTGGCAAAGGCTCTGTCTCTGGCTCTAAAACTCATATTCATCCTAATTTGAGTACAGAAAATGGTTTCAATTTGCCTCGGTTACTCAATTTTGGTTTGCCTGAGCAGATAAAGAAGGATGTCCATGACAAACCTAGTGACAGGACACAACAAAGTGTATCACTGTCTGACATATTCTTAAATGAGATTTTAGGAAAAAATCAATCTGTGTCAGAGGGAGTAAAATCCAAGTTTCCAGATAAAACCTCTGTAACTCCAAGTCCTTTTGATTCAATCCAGTCTTCTGAACACCTAAAATCTGATTATCATAAGCATGCATCAAACTCAAGTCAAAAGGCACTCTTGTCAACTTTAGCATTTGCAGCAGAGCATGAATCTGACATTAAGATGAAATGCCCTTCTGTTGATTCATCAGCATGA 2079 0.3983 MAFPPYRRSHLRSNTYHALVHLLSHFAEYNSSHETSTQPFNIPDDGIGRMDRVNQEKRPKCSEVVDSDFLSPTDPISQKDMVEVQEIIEGVGDKDTDFTSNKIVLDDIEHMMEIEDMPTPVNGFDKEHELMNEFELVMKGTEDLICDSDLIPMNTEFDVKHNDGREVGLMDFQVDMEEGEISGDLGKDGNSCDVPSADALILPQKQVDDLQEPVNVTRNMMYPSTIVNQEKEKDCEPTSSAVNSLQDGNDSGQVEPITGDNKRIACRVEVAISEKTFECKKEDKMKSMNASKRNKRGGKKDKKKAYRMKRAEKNRELGVKSLQFQKFVQKPKAVSHCRHYIMGRCYEGDKCQFSHDVVPRTKSKPCGHFAHNSCMKGNDCPFDHELSKYPCNNILSQGFCRRGESCLFSHQVSKEDIPSNIPTPSNMRRPVLSTLQSGNANSSTPVSNNHGSGTMQQNLLTHSSGIHSRVNVEHKAANTAQKQPTPPKGISFINLAKFTPSPSAQKQGTVTIKESPLQTGMHEEQRAFNKSQNKVEIAKKLPSVTPKGVNFLSFGKGSVSGSKTHIHPNLSTENGFNLPRLLNFGLPEQIKKDVHDKPSDRTQQSVSLSDIFLNEILGKNQSVSEGVKSKFPDKTSVTPSPFDSIQSSEHLKSDYHKHASNSSQKALLSTLAFAAEHESDIKMKCPSVDSSA 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1861g00012 692 ProSiteProfiles Zinc finger C3H1-type profile. 390 413 IPR000571 GO:0046872
Vium1861g00012 692 ProSiteProfiles Zinc finger C3H1-type profile. 331 358 IPR000571 GO:0046872
Vium1861g00012 692 MobiDBLite consensus disorder prediction 238 257 - -
Vium1861g00012 692 ProSiteProfiles Zinc finger C3H1-type profile. 360 387 IPR000571 GO:0046872
Vium1861g00012 692 MobiDBLite consensus disorder prediction 627 648 - -
Vium1861g00012 692 MobiDBLite consensus disorder prediction 282 306 - -
Vium1861g00012 692 Gene3D - 323 389 - -
Vium1861g00012 692 MobiDBLite consensus disorder prediction 291 306 - -
Vium1861g00012 692 SUPERFAMILY CCCH zinc finger 332 356 IPR036855 GO:0046872
Vium1861g00012 692 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 175 687 IPR045124 GO:0003723|GO:0045892
Vium1861g00012 692 SMART c3hfinal6 360 386 IPR000571 GO:0046872
Vium1861g00012 692 SMART c3hfinal6 330 357 IPR000571 GO:0046872
Vium1861g00012 692 SMART c3hfinal6 388 412 IPR000571 GO:0046872
Vium1861g00012 692 MobiDBLite consensus disorder prediction 238 256 - -
Vium1861g00012 692 MobiDBLite consensus disorder prediction 627 659 - -
Vium1861g00012 692 Pfam CCCH-type zinc finger 336 356 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1861g00012 Vium-Chr1861 116908 122448 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium1861g00012 zf-CCCH_4 1.5e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1861g00012 - - vun:114165961 1170.61