Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1861g00011 ATGGCTTTCCCTCCTTACCGAAGATCCCATTTGCGTAGCAACACTTACCATGCTCTTGTTCACCTACTCTCTCACTTTGCTGAGTACAACTCTTCACATGAAACTTCAACCCAACCCTTCAACATTCCGGATGATGGCATTGGTAGAATGGATAGAGTAAACCAAGAAAAGAGGCCCAAGTGCTCTGAAGTTGTTGATTCTGATTTTCTGAGTCCTACGGATCCTATTAGCCAGAAGGATATGGTGGAGGTTCAGGAGATCATTGAGGGGGTTGGAGACAAGGATACGGATTTTACTTCCAACAAGATTGTCCTAGATGATATAGAACATATGATGGAAATAGAGGACATGCCTACCCCAGTAAATGGGTTTGATAAGGAGCATGAGCTGATGAATGAGTTTGAACTTGTTATGAAAGGAACTGAAGATCTTATTTGTGATAGTGATTTAATTCCCATGAACACTGAATTTGATGTGAAACATAATGATGGCCGTGAAGTTGGGTTGATGGACTTTCAAGTAGACATGGAAGAGGGAGAAATTTCTGGAGACTTGGGAAAGGATGGCAATTCATGTGATGTTCCGTCTGCAGATGCTTTAATTTTACCGCAGAAGCAGGTAGATGACCTTCAGGAGCCTGTAAATGTTACTAGAAATATGATGTATCCTTCTACGATTGTGAACCAAGAAAAGGAGAAAGATTGTGAGCCTACTTCCTCTGCGGTAAATTCTCTTCAAGATGGCAATGATAGTGGACAGGTGGAGCCTATAACTGGTGACAACAAAAGAATTGCATGCAGAGTTGAAGTAGCAATTTCTGAAAAAACTTTTGAATGTAAGAAGGAAGATAAAATGAAGTCGATGAATGCCAGTAAAAGAAATAAGCGTGGTGGAAAGAAAGACAAAAAAAAGAAGGCTTATAGAATGAAGAGAGCAGAAAAGAACAGAGAGCTAGGTGTTAAAAGTTTGCAATTTCAGAAGTTTGTACAGAAACCAAAAGCTGTCTCACATTGTCGGCATTATATTATGGGAAGGTGCTATGAGGGTGACAAATGTCAGTTTTCACATGATGTGGTGCCTCGAACAAAATCCAAGCCATGTGGTCACTTTGCTCATAACTCTTGCATGAAAGGGAATGATTGCCCATTTGATCACGAACTCTCAAAGTATCCTTGTAACAATATTCTATCCCAAGGCTTTTGTAGAAGAGGTGAATCTTGCTTGTTTTCACACCAGGTATCCAAAGAAGATATCCCTTCAAATATCCCTACCCCTTCAAATATGCGCAGACCAGTGTTGTCTACTCTTCAGTCAGGAAATGCAAATTCCAGTACACCAGTTAGCAATAATCATGGCTCTGGTACTATGCAGCAAAATCTCTTAACTCATTCTTCTGGAATTCATTCTCGGGTGAATGTTGAACATAAGGCAGCAAACACTGCACAAAAACAGCCTACACCACCTAAAGGAATCAGTTTCATCAATCTTGCAAAATTCACGCCCAGCCCTTCTGCACAAAAACAAGGCACAGTAACAATCAAGGAAAGTCCTTTACAAACAGGGATGCATGAAGAACAACGTGCATTTAACAAAAGTCAAAACAAGGTGGAGATTGCAAAGAAACTGCCATCTGTGACACCTAAAGGAATAAAGAAGGATGTCCATGACAAACCTAGTGACAGGACACAACAAAGTGTATCACTGTCTGACATATTCTTAAATGAGATTTTAGGAAAAAATCAATCTGTGTCAGAGGGAGTAAAATCCAAGTTTCCAGATAAAACCTCTGTAACTCCAAGTCCTTTTGATTCAATCCAGTCTTCTGAACACCTAAAATCTGATTATCATAAGCATGCATCAAACTCAAGTCAAAAGGCACTCTTGTCAACTTTAGCATTTGCAGCAGAGCATGAATCTGACATTAAGATGAAATGCCCTTCTGTTGATTCATCAGCATGA 1959 0.3992 MAFPPYRRSHLRSNTYHALVHLLSHFAEYNSSHETSTQPFNIPDDGIGRMDRVNQEKRPKCSEVVDSDFLSPTDPISQKDMVEVQEIIEGVGDKDTDFTSNKIVLDDIEHMMEIEDMPTPVNGFDKEHELMNEFELVMKGTEDLICDSDLIPMNTEFDVKHNDGREVGLMDFQVDMEEGEISGDLGKDGNSCDVPSADALILPQKQVDDLQEPVNVTRNMMYPSTIVNQEKEKDCEPTSSAVNSLQDGNDSGQVEPITGDNKRIACRVEVAISEKTFECKKEDKMKSMNASKRNKRGGKKDKKKKAYRMKRAEKNRELGVKSLQFQKFVQKPKAVSHCRHYIMGRCYEGDKCQFSHDVVPRTKSKPCGHFAHNSCMKGNDCPFDHELSKYPCNNILSQGFCRRGESCLFSHQVSKEDIPSNIPTPSNMRRPVLSTLQSGNANSSTPVSNNHGSGTMQQNLLTHSSGIHSRVNVEHKAANTAQKQPTPPKGISFINLAKFTPSPSAQKQGTVTIKESPLQTGMHEEQRAFNKSQNKVEIAKKLPSVTPKGIKKDVHDKPSDRTQQSVSLSDIFLNEILGKNQSVSEGVKSKFPDKTSVTPSPFDSIQSSEHLKSDYHKHASNSSQKALLSTLAFAAEHESDIKMKCPSVDSSA 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1861g00011 652 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 174 566 IPR045124 GO:0003723|GO:0045892
Vium1861g00011 652 MobiDBLite consensus disorder prediction 238 257 - -
Vium1861g00011 652 SUPERFAMILY CCCH zinc finger 333 357 IPR036855 GO:0046872
Vium1861g00011 652 ProSiteProfiles Zinc finger C3H1-type profile. 332 359 IPR000571 GO:0046872
Vium1861g00011 652 Gene3D - 324 389 - -
Vium1861g00011 652 SMART c3hfinal6 389 413 IPR000571 GO:0046872
Vium1861g00011 652 SMART c3hfinal6 331 358 IPR000571 GO:0046872
Vium1861g00011 652 SMART c3hfinal6 361 387 IPR000571 GO:0046872
Vium1861g00011 652 ProSiteProfiles Zinc finger C3H1-type profile. 361 388 IPR000571 GO:0046872
Vium1861g00011 652 Pfam CCCH-type zinc finger 337 357 IPR041367 -
Vium1861g00011 652 MobiDBLite consensus disorder prediction 238 256 - -
Vium1861g00011 652 MobiDBLite consensus disorder prediction 586 620 - -
Vium1861g00011 652 MobiDBLite consensus disorder prediction 282 310 - -
Vium1861g00011 652 MobiDBLite consensus disorder prediction 586 608 - -
Vium1861g00011 652 ProSiteProfiles Zinc finger C3H1-type profile. 391 414 IPR000571 GO:0046872
Vium1861g00011 652 MobiDBLite consensus disorder prediction 291 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1861g00011 Vium-Chr1861 116908 122448 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium1861g00011 zf-CCCH_4 1.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1861g00011 - - vun:114165961 1072