Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1861g00008 ATGGCAGAAGAAAATGAAGGAATAAAAACATTTAAGGATTTGGGCTTATCTGAATCACTGGTTGAAGCATGTGAAAAATTGGGTTGGAAAACTCCACTGAAGATACAGATAGAAGCTATTCCTCTTGCATTAGAAGGTAAAGATGTGATAGGGCTTGCCCAAACTGGTTCTGGGAAGACAGGAGCTTTTGCTCTTCCTATATTGCATGCCCTCTTAGACGCACCTCGTCCAAAAGATTTCTTTGCTTGCGTGCTGTCTCCCACTAGAGAACTTGCTATTCAAATTGCTGAGCAGTTTGAAGCTCTAGGTTCAGAAATTGGTGTCAAGTGCGCTGTGCTTGTTGGAGGAATTGACATGGTGCAACAATCCATCAAGATAGCAAAGCAACCTCATATTATTGTTGGGACCCCTGGACGAGTTTTGGATCACCTAAAACACACAAAAGGATTTTCTCTTAGTAGATTAAAATACCTGGTCTTAGATGAGGCAGATAGGTTGTTGAACGAGGACTTTGAGGAATCACTTAATGAGATTTTACAAATGATTCCTCGTGAGCGTAGAACGTTTCTGTTTTCTGCTACAATGACTAAGAAGGTCCAGAAGCTCCAGAGAGTTTGTTTAAGGAATCCTGTGAAGATTGAAGCAGCGTCTAAATATTCCACTGTTGACACATTGAAGCAGCAGTATCGATTCTTGCCCGCCAAACACAAGGACTGCTACCTAGTATATATCCTCACTGAAATGACTGGAAGTACGTCAATGGTGTTCACTCGTACCTGTGATTCAACTCGACTTCTAGCATTGATCCTTAGGAATCTTGGTTTAAAAGCGATACCTATTAATGGTCATATGAGCCAGCCAAAGAGACTTGGAGCTTTGAACAAGTTCAAATCTGGGGAGTGCAATATTCTCCTTTGTACTGACGTGGCTAGCAGAGGACTGGATATTCCCACTGTAGATATGGTGATTAACTATGATATTCCCACAAATTCCAAAGATTATATACATCGCGTGGGAAGAACTGCTCGAGCAGGACGCTCTGGAGTTGCCATTTCCCTTGTAAATCAGTATGAACTGGAGTGGTACATTCAAATAGAGAAGCTTATAGGCAAAAAGCTACCTGAGTACCCTGCACAAGAAGAGGAAGTTCTCCTTTTGGAAGAACGTGTTAGTGAAGCAAAAAGATTAGCTGCCACGAAAATGAAGGAGGCTGGAGGGAAGAAGAAACGGAGAGGTGAGGAATATAATGATGGGGAAGATATCGACAAGTACTTGGGTCTCAAGGATGGAAAATCATCCAAAAAGTTTAGAAGATGA 1317 0.4176 MAEENEGIKTFKDLGLSESLVEACEKLGWKTPLKIQIEAIPLALEGKDVIGLAQTGSGKTGAFALPILHALLDAPRPKDFFACVLSPTRELAIQIAEQFEALGSEIGVKCAVLVGGIDMVQQSIKIAKQPHIIVGTPGRVLDHLKHTKGFSLSRLKYLVLDEADRLLNEDFEESLNEILQMIPRERRTFLFSATMTKKVQKLQRVCLRNPVKIEAASKYSTVDTLKQQYRFLPAKHKDCYLVYILTEMTGSTSMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGECNILLCTDVASRGLDIPTVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPEYPAQEEEVLLLEERVSEAKRLAATKMKEAGGKKKRRGEEYNDGEDIDKYLGLKDGKSSKKFRR 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1861g00008 438 Gene3D - 1 218 IPR027417 -
Vium1861g00008 438 Pfam Helicase conserved C-terminal domain 240 345 IPR001650 -
Vium1861g00008 438 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 366 IPR027417 -
Vium1861g00008 438 Gene3D - 219 391 IPR027417 -
Vium1861g00008 438 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 240 384 IPR001650 -
Vium1861g00008 438 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 9 37 IPR014014 GO:0003724
Vium1861g00008 438 CDD SF2_C_DEAD 225 354 - -
Vium1861g00008 438 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 159 167 IPR000629 -
Vium1861g00008 438 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 9 403 - -
Vium1861g00008 438 CDD DEADc_DDX47 10 214 IPR044765 GO:0005524
Vium1861g00008 438 Pfam DEAD/DEAH box helicase 34 202 IPR011545 GO:0003676|GO:0005524
Vium1861g00008 438 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 213 IPR014001 -
Vium1861g00008 438 SMART helicmild6 264 345 IPR001650 -
Vium1861g00008 438 SMART ultradead3 28 228 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1861g00008 Vium-Chr1861 103334 111669 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1861g00008 6 377 Eukaryotic Initiation Factors Gene Family AT3G19760 31.649 4.41e-64 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1861g00008 K14777 - gmx:100775796 804.283