Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1861g00004 ATGGAAGCAGCAACGGTAGCAACCTCTTCTCTGAAGAAACTGAAGCGGAAGCGCAACCTGGCAAAAAGCGATCCTGAACTCGAACGACTCAACTCACTTCCGTGGAACTCTTCTCTTCCTCAAAACGATGACGATGACGCTTTCTCCTTGTTCATTGGCACCAACGAACTCGAAGGAGGTTTTCTTTCGCTCGAGGAGATTGATGAGGCGGAGTATGGTTTGAATATTCCTGAGCCTGAAGATGGCAAGAGGAAGACGAAGAAGAAGTCTATACAGAATGAAGATGTGAAGAAACAACAGCAAGATGGAGGTGATGGTGCTAGTAGTGACGAGGTCGAAGCTGAGTTGGACGAGAGTGTGAAGGCTAAAGAGAAGAAAAAGAAGAAGAAGAAGAAGACGAAAAAGAAGGATGCTACGGATGGCCCGAAAGTTGAGCAACCAGATGCTGGTTTAGATGCTAATGTTGAAGATGGTAAAGGTGAAGAGGACAATGATGAAGCTGAATTTTATGCATGGAGTGAGTTGAGGCTTCACCCTCTCCTAATGAAAGCAATATGCAAGCTTGGCTTCAAGGAACCAACACCAATACAGAAGGCTTGCATTCCAGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGGGCTGCAGAGACCGGATCTGGTAAAACATTAGCGTTTGGTTTGCCCATTTTGCAACGCATTTTGGAGGAGAGAGAAAAGGACGCAAACATGGTTGAAGAACCTGGAAAGTATTCTCCTAAAGGAGTTTTGAGGGCTCTCATTATTGCTCCAACTAGAGAACTTGCACTTCAGGTCACTGATCATCTGAAAGCTGTTGCAAAGTATATTAATGTTAGGGTGACCCCTATAGTTGGGGGGATTTTAGCAGAAAAGCAGGAGAGACTTTTAAAAGCAAAGCCTGAGATTGTTGTCGGAACTCCAGGGAGGTTATGGGAACTTATGTCAACTGGAGAAAAACATCTAGTTGAGTTACATTCACTCTCTTTCTTTGTGCTTGATGAGGCCGATCGGATGGTACAAAGTGGTCATTTTAAGGAGTTGCAGTCTATAATTGATATGCTTCCCATGTCCAACATCTCTACTGATGATAATTCTAAAAATGTACAAAAAGGTTGTGTTACAGTTTCTAGTTATCAAAGAAAGAAAAGACAAACACTTGTTTTTTCAGCTACTGTTGCACTGTCTGCTGATTTTCGCAAGAAGCTAAAACGTGGCTCAGGTCAAAAAAAGCAATCATCAACAGATGGATTGAATTCTATCGAAACTCTTTCTGAGCGCGCAGGAATGAGATCCAATGCTGCAATTATTGATCTTACTAATCCATCTATATTAGCAGCTAAGCTTGAGGAGTCATTTATTGAATGCAGAGAAGAAGATAAAGATGCATATTTGTATTATATTTTGACTGTCCATGGACAAGGTCGCACCATAGTTTTCTGCACGTCAATTGCAGCTTTACGTCATATTTCTTCCATATTACGGATTCTTGGAATCAATGTTTGGACTCTTCATGCTCAAATGCAGCAGCGAGCACGATTGAAGGCCATTGATCGCTTTCGGGAAAATGAAAATGGCATACTTGTTGCTACAGATGTTGCTGCCAGGGGTCTTGATATTCCTGGTGTTAGAACTGTTGTCCATTATCAGCTTCCACATTCAGCAGAGGTTTATGTTCATAGAAGTGGAAGAACAGCCAGAGCTTCCGCCGAAGGTTGTAGCATTGCTTTAATATCACCAAAAGATACGTCCAAGTTTGCTTCACTGTGCAAATCATTTTCTAAGGATAACTTTCAGCGGTTTCCTTTAGAGAACTCTTACATGCCAGAGGTCCTAAAAAGACTGTCTCTTGCACGACAAATAGACAAGATAACAAGGAAAGATTCCCAGGTAAAGGCTGAGAAAAACTGGTTTGATCGGAATGCTAGCTCAGTTGAATTAGTTACTGAAAATTATGACAGTGAAGAGGAGCAAGTGAACAAACATAAGGAAATAAAGGCCAGCTCTAGACAATTGAAGAAATTGCAGGAGGAGCTCAAAATGCTGATTTCTCGCCCATTACAATCAAAATCATTTTCACATCGGTATTTAGCAGGGTCTGGTGTCACACCCCTCATGCAGGAGCAATTGCAACAGTTAGCAAGGCAAAAATTAAGTGATCACCAGGGTTCTAGTCTAGGCAAAAAGGGAAAATTGGTTGTGATTGGTCAAGATTGCATGGATGCACTTCAAGCTCTTCGAAGTGGTGGTGAAGAGGTGCGAATGGATATCAAGGAGTTGGCCGGAAAACAGAGAAATATAGAGAATTTAAAAAGAAAGCGAAAAGAGGAGAAAAAACGTTTGCGTGATCAGCGTAGAAAGCAGAAGAAAAAGCTAAAATACGGGGATGAATAG 2409 0.4193 MEAATVATSSLKKLKRKRNLAKSDPELERLNSLPWNSSLPQNDDDDAFSLFIGTNELEGGFLSLEEIDEAEYGLNIPEPEDGKRKTKKKSIQNEDVKKQQQDGGDGASSDEVEAELDESVKAKEKKKKKKKKTKKKDATDGPKVEQPDAGLDANVEDGKGEEDNDEAEFYAWSELRLHPLLMKAICKLGFKEPTPIQKACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQRILEEREKDANMVEEPGKYSPKGVLRALIIAPTRELALQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLKAKPEIVVGTPGRLWELMSTGEKHLVELHSLSFFVLDEADRMVQSGHFKELQSIIDMLPMSNISTDDNSKNVQKGCVTVSSYQRKKRQTLVFSATVALSADFRKKLKRGSGQKKQSSTDGLNSIETLSERAGMRSNAAIIDLTNPSILAAKLEESFIECREEDKDAYLYYILTVHGQGRTIVFCTSIAALRHISSILRILGINVWTLHAQMQQRARLKAIDRFRENENGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISPKDTSKFASLCKSFSKDNFQRFPLENSYMPEVLKRLSLARQIDKITRKDSQVKAEKNWFDRNASSVELVTENYDSEEEQVNKHKEIKASSRQLKKLQEELKMLISRPLQSKSFSHRYLAGSGVTPLMQEQLQQLARQKLSDHQGSSLGKKGKLVVIGQDCMDALQALRSGGEEVRMDIKELAGKQRNIENLKRKRKEEKKRLRDQRRKQKKKLKYGDE 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1861g00004 802 Coils Coil 758 796 - -
Vium1861g00004 802 CDD DEADc_DDX24 181 443 - -
Vium1861g00004 802 Coils Coil 109 129 - -
Vium1861g00004 802 MobiDBLite consensus disorder prediction 1 47 - -
Vium1861g00004 802 Gene3D - 451 694 IPR027417 -
Vium1861g00004 802 Gene3D - 115 411 IPR027417 -
Vium1861g00004 802 Pfam Helicase conserved C-terminal domain 465 573 IPR001650 -
Vium1861g00004 802 MobiDBLite consensus disorder prediction 72 164 - -
Vium1861g00004 802 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 202 416 IPR014001 -
Vium1861g00004 802 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 453 614 IPR001650 -
Vium1861g00004 802 SMART ultradead3 189 418 IPR014001 -
Vium1861g00004 802 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 337 345 IPR000629 -
Vium1861g00004 802 MobiDBLite consensus disorder prediction 76 101 - -
Vium1861g00004 802 MobiDBLite consensus disorder prediction 30 44 - -
Vium1861g00004 802 MobiDBLite consensus disorder prediction 771 802 - -
Vium1861g00004 802 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 170 198 IPR014014 GO:0003724
Vium1861g00004 802 Pfam DEAD/DEAH box helicase 194 399 IPR011545 GO:0003676|GO:0005524
Vium1861g00004 802 PANTHER RNA HELICASE 127 742 - -
Vium1861g00004 802 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 257 590 IPR027417 -
Vium1861g00004 802 Coils Coil 650 690 - -
Vium1861g00004 802 CDD SF2_C_DEAD 454 583 - -
Vium1861g00004 802 SMART helicmild6 493 574 IPR001650 -
Vium1861g00004 802 MobiDBLite consensus disorder prediction 780 794 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1861g00004 Vium-Chr1861 69530 91209 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1861g00004 171 614 Eukaryotic Initiation Factors Gene Family AT5G11200 28.728 4.29e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1861g00004 K14805 - gmx:100806018 1310.82