Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1859g00003 ATGGATTATGGAGGAAAGATTGGTGGAAGTGAAAGAGGTGGGCCTTGTGGTGCCTGCAAGTTTCTGAGGAGAAAGTGTGTGAAGAGTTGCATTTTTGCACCATACTTTGACTCAGACCAAGGAACTGCACATTTTGCTGCAGTTCACAAGGTGTTTGGTGCAAGCAATGCCTCTAAGTTACTCATGAGAATCCCTGCACACAAGCGTCTTGATGCTGTTGTTACTCTTTGCTATGAGGCTTTGGCTAGGGCTAGAGATCCTGTTTATGGTTGTGTTGGTCACCTCTTTGCTCTTCAACAACAGGTTATGAACTTGCAGGCTGAGTTGACCTATGTTCAAGCCCGTTTGGCCACAATGCAGCGCATGCCAATGGCAGTGGCTCCTCTTCCACACCCTCAAAGTTCATCACCACAAACTCTTCCTTCCTCAGATCATTTGGCATCAAATGCTGAAATGCAGAGTGTCCCTATTATGCAGTATGATCCTCTTCAACCACATTCAGCATCATTAGAGTTAAGCAGCATCCTTTTCAACCAATCAGATCAACAACTGGAGGATAGGGAACTCCAAACTTTGGCTCGAGAATTTGTCACCAAATACTTGCCCGGAGTAAGATTCCAGCAATCTAACTCTCCCTAA 639 0.4538 MDYGGKIGGSERGGPCGACKFLRRKCVKSCIFAPYFDSDQGTAHFAAVHKVFGASNASKLLMRIPAHKRLDAVVTLCYEALARARDPVYGCVGHLFALQQQVMNLQAELTYVQARLATMQRMPMAVAPLPHPQSSSPQTLPSSDHLASNAEMQSVPIMQYDPLQPHSASLELSSILFNQSDQQLEDRELQTLAREFVTKYLPGVRFQQSNSP 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1859g00003 212 PANTHER LOB DOMAIN CONTAINING PROTEIN 12 153 - -
Vium1859g00003 212 ProSiteProfiles LOB domain profile. 14 116 IPR004883 -
Vium1859g00003 212 Pfam Lateral organ boundaries (LOB) domain 15 113 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1859g00003 Vium-Chr1859 36916 40499 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1859g00003 13 210 AS2 family AT4G00210 53.704 5.91e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium1859g00003 LOB 3.6e-37 No_clan