Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1858g00008 ATGGAACGGTATGAGATAATCAAAGATATTGGGTCAGGGAACTTTGGTGTCGCAAAGCTCGTCAAGGAAAAATGGACTGCTGAATTATACGCTGTCAAGTTCATTGAGAGAGGCTTCAAGATTGATGAGCACGTGCAAAGAGAGATTATAAATCACAGAGCTTTGAAGCACCCCAATATCATTAGATTCAAAGAGGTGTTACTTACTCCAACTCATCTTGCAATAGTCATGGAATATGCTTCCGGGGGAGAACTGTTTGAAAGAATATGTAGTGCTGGGAGATTCAGTGAGGACGAGGCAAGATATTTCTTTCAGCAATTGATTTCTGGAGTCAGCTATTGCCATTCAATGGAAATTTGCCATAGGGATCTTAAGCTGGAAAACACACTTCTAGATGGAAGCTCAGCACCACGACTTAAAATCTGCGACTTTGGTTACTCAAAGTCATCAGTTCTGCACTCCCAGCCAAAATCTACTGTAGGAACCCCTGCCTATATTGCACCAGAGGTTTTGTCAAGAAAAGAATATGATGGGAAGGTTGCAGATGTTTGGTCTTGTGGGGTGACCTTATATGTGATGTTGGTTGGTGCATATCCTTTTGAAGACCCAGAAGACCCAAGAAACTTCAGAAAAACACTTCAGAGAATTCTTAGCGTCCACTATTCTATTCCAGACTATGTACGTATCAGTAAAGAGTGTAGACACCTTTTGTCTCGAATATTTGTGGCCAACCCAGAAAAGAGAATTAACATACCAGAGATAAAAATGCACCCTTGGTTCCTGAAGAACTTACCAGTAGAATTTATGGAGGAGGGAGAAGGAGTGTTGCAAAATGACATGAAGGAATCGTGTGAGACTCAAAGCATTGAAGAAATATTGTCCATAATTCAAGAGGCTAGAAAACCGGGTGAGGGCCCAAGAGTTGGTGAGCAATTTGTTGGGGGCAGCATGGACCTTGATGACATCGATGCAGATGCTGACATCGATGATATTGAGACAAGCGGTGATTTTGTCTGTGCTTTGTGA 1026 0.4201 MERYEIIKDIGSGNFGVAKLVKEKWTAELYAVKFIERGFKIDEHVQREIINHRALKHPNIIRFKEVLLTPTHLAIVMEYASGGELFERICSAGRFSEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGSSAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLSRKEYDGKVADVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTLQRILSVHYSIPDYVRISKECRHLLSRIFVANPEKRINIPEIKMHPWFLKNLPVEFMEEGEGVLQNDMKESCETQSIEEILSIIQEARKPGEGPRVGEQFVGGSMDLDDIDADADIDDIETSGDFVCAL 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1858g00008 341 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1858g00008 341 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Vium1858g00008 341 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1858g00008 341 FunFam Serine/threonine-protein kinase SRK2E 80 268 - -
Vium1858g00008 341 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Vium1858g00008 341 FunFam Serine/threonine-protein kinase SAPK2 1 79 - -
Vium1858g00008 341 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vium1858g00008 341 PANTHER SERINE/THREONINE KINASE 2 278 - -
Vium1858g00008 341 CDD STKc_SnRK2 3 259 - -
Vium1858g00008 341 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1858g00008 341 Gene3D Transferase(Phosphotransferase) domain 1 80 267 - -
Vium1858g00008 341 SUPERFAMILY Protein kinase-like (PK-like) 2 268 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1858g00008 Vium-Chr1858 62871 65975 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1858g00008 3 270 CBL-interacting serine-threonine protein kinases AT4G24400 43.682 2.01e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vium1858g00008 Pkinase 7.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1858g00008 K14498 - gmx:100807981 639.032