Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1858g00005 ATGCATCAACTTCACCCTTGGAGGAGACAGCTTGTGGTTCTTTTGGAAGAACATTCTGTTGATTATGCATGCACACCAGAAGAAGTGCAGCAACACTTTCAATCCTGTGGTACTGTGAACAGGGTCACTATCTTGACAGACAAGTTTGGCCAGCCTAAAGGTTTTGCTTATGTGGAATTTGTTGAAGTTGAAGCTGTTCAAGAGGCTCTCGTCTTGAATGAATCTGAACTGCATGGCAGGCAACTGAAGGTTTTACCTAAGAGGACCAATGTCCCTGGAATGAAACAACATCGTCCTAGACGGTTTAATCCTTACATGGCATACGGCTTCAGGAGGCCATATACTCCTCCTTACTTTTACTCCCCTTATGGATATGGGAAGGTTCCTAGGTTTAGAAGGCCAAATCGTTACATGCCGTACTACTAG 426 0.4437 MHQLHPWRRQLVVLLEEHSVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQHRPRRFNPYMAYGFRRPYTPPYFYSPYGYGKVPRFRRPNRYMPYY 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1858g00005 141 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 20 100 - -
Vium1858g00005 141 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 83 IPR000504 GO:0003723
Vium1858g00005 141 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 89 IPR000504 GO:0003723
Vium1858g00005 141 Gene3D - 18 93 IPR012677 -
Vium1858g00005 141 SMART rrm1_1 10 85 IPR000504 GO:0003723
Vium1858g00005 141 SUPERFAMILY RNA-binding domain, RBD 20 110 IPR035979 GO:0003676
Vium1858g00005 141 CDD RRM_II_PABPs 20 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1858g00005 Vium-Chr1858 30374 35561 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1858g00005 19 84 Eukaryotic Initiation Factors Gene Family AT2G36660 34.328 2.35e-07 47.0