Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1858g00004 ATGGAGGAGGAAGAGCACGAGGTGTACGGAGGAGAGATCCCCGACGAGGGTGAGATGGAAGGAGACGTAGACATGTCCGCCGCCGACGATGACGCCGCCGTCAAGGAGCTCGACGAGATGAAGCGCCGATTGAAGGAGATGGAGGAGGAAGCCGCAGCGCTTCGCGAGATGCAAGCCAAGGTCGAGAAGGAAATTGGCAGTGTTCAAGATCCTGCTAATGCAGCTGCTTCTCAAGCAAACAAGGAGGAGGCAGATTCTCGGTCTGTTTTTGTTGGCAATGTTGATTATGCATGCACACCAGAAGAAGTGCAGCAACACTTTCAATCCTGTGGTACTGTGAACAGGGTCACTATCTTGACAGACAAGTTTGGCCAGCCTAAAGGTTTTGCTTATGTGGAATTTGTTGAAGTTGAAGCTGTTCAAGAGGCTCTCGTCTTGAATGAATCTGAACTGCATGGCAGGCAACTGAAGGTTTTACCTAAGAGGACCAATGTCCCTGGAATGAAACAACATCGTCCTAGACGGTTTAATCCTTACATGGCATACGGCTTCAGGAGGCCATATACTCCTCCTTACTTTTACTCCCCTTATGGATATGGGAAGGTTCCTAGGTTTAGAAGGCCAAATCGTTACATGCCGTACTACTAG 648 0.4938 MEEEEHEVYGGEIPDEGEMEGDVDMSAADDDAAVKELDEMKRRLKEMEEEAAALREMQAKVEKEIGSVQDPANAAASQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQHRPRRFNPYMAYGFRRPYTPPYFYSPYGYGKVPRFRRPNRYMPYY 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1858g00004 215 CDD RRM_II_PABPs 88 159 - -
Vium1858g00004 215 Coils Coil 30 64 - -
Vium1858g00004 215 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 163 IPR000504 GO:0003723
Vium1858g00004 215 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Vium1858g00004 215 FunFam Polyadenylate-binding protein 1 25 159 - -
Vium1858g00004 215 Gene3D - 25 159 IPR012677 -
Vium1858g00004 215 SUPERFAMILY RNA-binding domain, RBD 77 183 IPR035979 GO:0003676
Vium1858g00004 215 MobiDBLite consensus disorder prediction 1 23 - -
Vium1858g00004 215 SMART rrm1_1 88 159 IPR000504 GO:0003723
Vium1858g00004 215 MobiDBLite consensus disorder prediction 64 84 - -
Vium1858g00004 215 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 4 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1858g00004 Vium-Chr1858 30374 35809 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1858g00004 84 158 Eukaryotic Initiation Factors Gene Family AT2G36660 34.211 3.48e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1858g00004 K14396 - gmx:100789721 386.726