Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1848g00002 ATGGATCCGGGTGGGATGATGAACGAGGGTTCCTTTGCGAATAATGGGAGCGGCAATACGGCGCCGTATAGCTTGGCGGAGATCTGGCAGTTTCCCCAAGCGATTAATGGCGGCGGAGGATTGGGTCTCCGGAGCCCGCAGTTCGAACATGGGCCGGGGCAGTTTGGGGATTTGCCTCCCAGGCCCAACAATGGGCTTGGGACGAGTAACACCAGAAAGCGGCGAGACTCAGAGGACGATTCAGCTAAGACCGTGTCCACCAGCAATGCCGTGAATGAGGGTGATGGAAAACGTGTTAAAGCAACGGCAAATGGTGATGGTAATGGTAAAGGTGAAGGAGAAGTCAGTTCAGGAAAGCCTGCGGAGCAAAGCGCAAAGCCTCCATTGGAACCTCCCAAGCAAGATTACATTCACGTCCGAGCCAGAAGGGGTCAAGCCACTGATAGCCACAGTCTTGCAGAANCT 465 0.5462 MDPGGMMNEGSFANNGSGNTAPYSLAEIWQFPQAINGGGGLGLRSPQFEHGPGQFGDLPPRPNNGLGTSNTRKRRDSEDDSAKTVSTSNAVNEGDGKRVKATANGDGNGKGEGEVSSGKPAEQSAKPPLEPPKQDYIHVRARRGQATDSHSLAEX 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1848g00002 155 MobiDBLite consensus disorder prediction 133 155 - -
Vium1848g00002 155 MobiDBLite consensus disorder prediction 10 26 - -
Vium1848g00002 155 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 71 154 IPR024097 GO:0006355
Vium1848g00002 155 MobiDBLite consensus disorder prediction 1 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1848g00002 Vium-Chr1848 8908 9631 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1848g00002 1 154 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 47.337 5.79e-31 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1848g00002 - - vum:124828151 321.242