Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1848g00001 ATGGATCCGGGTGGGATGATGAACGAGGGTTCCTTTGCGAATAATGGGAGCGGCAATACGGCGCCGTATAGCTTGGCGGAGATCTGGCAGTTTCCCCAAGCGATTAATGGCGGCGGAGGATTGGGTCTCCGGAGCCCGCAGTTCGAACATGGGCCGGGGCAGTTTGGGGATTTGCCTCCCAGGCCCAACAATGGGCTTGGGACGAGTAACACCAGAAAGCGGCGAGACTCAGAGGACGATTCAGCTAAGACCGTGTCCACCAGCAATGCCGTGAATGAGGGTGATGGAAAACGTGTTAAAGCAACGGCAAATGGTGATGGTAATGGTAAAGGTGAAGGAGAAGTCAGTTCAGGAAAGCCTGCGGAGCAAAGCGCAAAGCCTCCATTGGAACCTCCCAAGCAAGATTACATTCACGTCCGAGCCAGAAGGGGTCAAGCCACTGATAGCCACAGTCTTGCAGAACGAGCTCGAAGGGAAAAGATTAGTGAAAGGATGAAAATTCTTCAGGATTTGGTCCCTGGTTGTGATAAGGTTATCGGGAAAGCGTTGGTCCTTGATGAAATAATTAATTATATCCAATCTCTTCAGCGCCAAGTTGAGTTTTTGTCAATGAAGCTTGAAGCAGTGAATTCGAGACTGAACTCCGAAGCCTTTCCTCCTAAGGATTTTGGTCAGCATGCATATGATCCCGCGGGCATGCCGTTCGGTTCACAAGCTCCAAGAGAGTATAGCAGAGGATCTTCACCTGAATGGTTACACATGCAGGTAGGAGGAGGTTTTGAAAGAACAACGTAG 795 0.5031 MDPGGMMNEGSFANNGSGNTAPYSLAEIWQFPQAINGGGGLGLRSPQFEHGPGQFGDLPPRPNNGLGTSNTRKRRDSEDDSAKTVSTSNAVNEGDGKRVKATANGDGNGKGEGEVSSGKPAEQSAKPPLEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCDKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNSEAFPPKDFGQHAYDPAGMPFGSQAPREYSRGSSPEWLHMQVGGGFERTT 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1848g00001 264 Pfam Helix-loop-helix DNA-binding domain 149 196 IPR011598 GO:0046983
Vium1848g00001 264 CDD bHLH_AtBPE_like 135 214 - -
Vium1848g00001 264 Coils Coil 192 212 - -
Vium1848g00001 264 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 72 234 IPR024097 GO:0006355
Vium1848g00001 264 MobiDBLite consensus disorder prediction 1 22 - -
Vium1848g00001 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 212 IPR036638 GO:0046983
Vium1848g00001 264 Gene3D - 142 218 IPR036638 GO:0046983
Vium1848g00001 264 FunFam Basic helix-loop-helix transcription factor 142 214 - -
Vium1848g00001 264 MobiDBLite consensus disorder prediction 34 133 - -
Vium1848g00001 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 195 IPR011598 GO:0046983
Vium1848g00001 264 SMART finulus 151 201 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1848g00001 Vium-Chr1848 6690 8909 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1848g00001 1 222 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 59.833 7.45e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium1848g00001 HLH 2.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1848g00001 - - gmx:100784478 453.366