Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1847g00004 ATGGAAATCGTTCGTCCTCAGAGTCGCAGGAACTTCTTGTCTTCCTCCTCCGACGCCGTTTCTGTTCCCACAATTCCCCTTTATCGCTCTGCTCCCTCACTCGAAGTTAGACTGGAGGAGTTCGAGTCCTTCGCCATCGACCGCCTCCGAGTTCTCAAGGGCATTTCTGATGGTATGTCGCGGGGGAAAAAACCGGAAGAAATGGAAAATTTGGTAAAGGACCTCTGGAAAGTGAATATGAGACACCAACAGACTTCTGAAGTTCTGAACAAGGATATTATATCTCATTTTGCTCTACGTCTTGTGTATTGCAGAACGGAGGACTTGAGGAAATGGTTTCTTTCCATGGAATCTGCACTCTTTCGCTACCGCTTTCGACTTCTGAATACTGAAGCTCAGAGAGCAGTCATGGAAGAATTTGACCTTCCTTACAGGGCTGTAAGCAGTGCGGAATTTGAGAGCATAAAGGAGAAATTGGGACAAGTTGCACGGTCTATGGGTCAACCTTCACCCAGTGCTGATGCTATCTTCTACAAGGTACCCTTTGAAGAAGTTCCAGAGCTTGTGGCTGGGCGGAAAGTATTAATTAGTCAAGGATATGCATATGTTGCAATGAATCAGATTGTTTCACTTGTAGCCACACTATTCCGCAGTCAGCTATCGAAGACACTCATCCTTACAAACAGAAAATGGACATCTTCAATTCGAGAACAAGAGAAACATAGGTTGACTCCTATTGTTGAAGCCGTGTGCGCAAGTTATTTGGGTCCTGACTATTCTCAGTCAAGAGAATGTGCTGACATATCACTAAAGGACATTGATCAAGTCGCCAAGAGCTCATTTCCTTTGTGCATGCGTCACCTATTTGAAAAGCTGAAAGAGGATCATCATTTAAAGCATGGAGGGAGGATGCAACTAGGCCTCTTTCTTAAGGGTGTTGGCTTGAATCTGGATGATGCACTTGCTTTTTGGAGGGCAGAGTTCTCTAAAAGGGTTGGTTTGGAGAAGTTTGAGAAACAGTACGCATACGGCATACGTCATAATTTTGGAAAGGAAGGGAAGAGAACAGATTATTCTCCCTATTCTTGTACAAAGATCATCTCATCGACTCCTGGAACGGGAGATCATCATGGTTGTCCCTATCGACATTTCAGCGAGGAGAATCTAAGAGCTGCTCTCAGCAGAATGGGGGTAAACAGTAGAGCAATGGAAGATGTGATAGACAAAGCGAGAAATAGACATTACCAGTTGGCTTGCACTTTGACATTTGAAGCTCTTCATGGCATGCCGTGTGATGCAGGGATTAACCATCCAAATCAATACTTCAGTGACAGCAGAAAGATATTACAGTCAAAGAATCCTTCAGCCTAG 1371 0.4435 MEIVRPQSRRNFLSSSSDAVSVPTIPLYRSAPSLEVRLEEFESFAIDRLRVLKGISDGMSRGKKPEEMENLVKDLWKVNMRHQQTSEVLNKDIISHFALRLVYCRTEDLRKWFLSMESALFRYRFRLLNTEAQRAVMEEFDLPYRAVSSAEFESIKEKLGQVARSMGQPSPSADAIFYKVPFEEVPELVAGRKVLISQGYAYVAMNQIVSLVATLFRSQLSKTLILTNRKWTSSIREQEKHRLTPIVEAVCASYLGPDYSQSRECADISLKDIDQVAKSSFPLCMRHLFEKLKEDHHLKHGGRMQLGLFLKGVGLNLDDALAFWRAEFSKRVGLEKFEKQYAYGIRHNFGKEGKRTDYSPYSCTKIISSTPGTGDHHGCPYRHFSEENLRAALSRMGVNSRAMEDVIDKARNRHYQLACTLTFEALHGMPCDAGINHPNQYFSDSRKILQSKNPSA 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1847g00004 456 FunFam DNA primase large subunit 5 250 - -
Vium1847g00004 456 Gene3D - 4 249 - -
Vium1847g00004 456 PANTHER DNA PRIMASE LARGE SUBUNIT 21 452 IPR007238 GO:0006269
Vium1847g00004 456 Pfam Eukaryotic and archaeal DNA primase, large subunit 177 442 IPR007238 GO:0006269
Vium1847g00004 456 CDD PriL_PriS_Eukaryotic 27 445 IPR016558 -
Vium1847g00004 456 PIRSF DNA_primase_large 2 456 IPR016558 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1847g00004 1 456 Core DNA Replication Machinery Family AT1G67320 66.667 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1847g00004 K02685 - gmx:100806321 835.099