Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1844g00003 ATGGTTCCATTAAGCACTTTCATGGACCAACCTAACATTATTACAATGCTGATGTTCACAACCATGGCATTGTTGCTATCACGGGCCCAGGCCATGCGAAAGTGCGGGAATTGCGGTCCGAACCCGGTTCCTTACCCATTAAGCACCGGACCCGAATGTGGCGACCCGTGGTACAAGATCCGGTGCACCGCGGGTATTCTCTGGTTCGATGCACTCGCCGGATCATCTTACGCGATCAGGGCTATTGACCCGTTCACCCGTCGGATCATAACCCGACCCGCCACGCTGGCTCCTAAAATGTGCGTGTCCACGGACTTCCGCAGCGAAGGCATGCACCTGAACGAGACCCTTCCTTTTAGCGTGGCTTCCGGAAACACCGTTTTTCTCTTCAACTGCACCGCCCACGCGCCTTCGATGAACTGCTCCCCAAGCAGCGCGTGCCACAGCTACATTAAGGAGCACGCAGATTTCAGCGTGTGCGGGGCCGCGGGTGCTGGACCGTGCTGCGAGTACCGAAGCGGCGGGGCCCGCAAAGACTTCGCGATTCGCTTGCACGGCGGAGAGTGCGCGGCGTATGAGAGTTTTGTGGATTTTAACGGCACGGTGGCGACTGTGGAGAAGCGGTGGCCGGAGAGTGGGGTCGGGATCGAGTGGGTGGCACCACAGGAACCGGTTTGTAAGGCGAGTATAGATTGCAAGGAGTTGTTGAACTCGAAATGTGGAGTGGGGCCCAGTGGCGGGGTTCAAAGGTGCTTCTGCAATGCTGGGTTTGGGTGGGACCCCATCAATGGTTCCTGTCAACCACAAACTCAGACACACAACACAACGTGCACAGGACATGGTAAAGACAGCCACTGCAAAGTTCGGAAGAAAAAGAAGATGCTCGTGCCTGTGGTTGTTTCCATAGGAGGAATAGTGTTTGTTCTAGCAATCACAGGAGTGATCTTCTACAAGAAGCATAACCAAGCAAAAAGAAAAGCAAAGGAGGCTAAAAGGAACAAGAGAAAAGAAGTCTCAAGTGTGAAAGCCAGTGCTTTATCATCAAGAATCTTCACTGGCAGAGAGATAAGGAAGGCAACGAACGATTTCTCCCGAGAAAATCTGATTGGAACTGGTGGATTCGGTGAAGTGTTCAAGGGGACATTCGATGATGGAACCGTGTTTGCCATCAAGCGTGCAAAGCTTGGAAGCACCAAAGGCATTGATCAGATGCAAAACGAGGTTCGAATTCTGTGCCAAGTAAACCACAGAAGCTTGGTGAGACTCCTTGGTTGTTGCTTGGAACTTGAACACCCTTTGCTGATATACGAGTACGTTTCTAATGGGACCCTTTTTGATTACCTTCATCGCCATTCTTGTGACACAAGGGAACCCCTGAAATTGCACCAAAGACTCAAAATTGCACACCAAACAGCCGAAGGGCTTTCATATCTGCATTCTGCAGCTGTGCCACCCATTTACCACCGAGACGTGAAATCAAGCAACATACTTCTTGATGACAAGCTTGATGCCAAGGTTTCTGACTTTGGCTTATCAAGGCTTGTTGAGTTGGCTGAAGAAAACAAGAGCCATATATTCACCAGTGCTCAAGGGACACTAGGGTACCTAGACCCTGAGTACTATCGTAACTTTCAGTTGACTGATAAGAGTGATGTTTATAGCTTTGGAGTAGTGCTGATGGAGTTGCTCACTGCTCAGAAAGCCATTGATTTCAACAGGGAAGAAGAGAGTGTGAACTTGGCCATGTATGGGAAGAGGAAAATGGTTGAGGAGAAGTTGATGGATGTGGTTGATCCTTTGCTTAAAGAGGGAGCGTGTGATTTGGAATTGGAAACTATGAAGTCATTGGGGTATCTCGCAGTTTCATGCTTGGATGATCAGAGGCAAAAACGGCCTTCCATGAAAGAAGTTGCTGATGAGATTGAAAACCTGATTAAAGTTGTTAAAGGTCAAGTTTCCAAATCATGA 1968 0.4934 MVPLSTFMDQPNIITMLMFTTMALLLSRAQAMRKCGNCGPNPVPYPLSTGPECGDPWYKIRCTAGILWFDALAGSSYAIRAIDPFTRRIITRPATLAPKMCVSTDFRSEGMHLNETLPFSVASGNTVFLFNCTAHAPSMNCSPSSACHSYIKEHADFSVCGAAGAGPCCEYRSGGARKDFAIRLHGGECAAYESFVDFNGTVATVEKRWPESGVGIEWVAPQEPVCKASIDCKELLNSKCGVGPSGGVQRCFCNAGFGWDPINGSCQPQTQTHNTTCTGHGKDSHCKVRKKKKMLVPVVVSIGGIVFVLAITGVIFYKKHNQAKRKAKEAKRNKRKEVSSVKASALSSRIFTGREIRKATNDFSRENLIGTGGFGEVFKGTFDDGTVFAIKRAKLGSTKGIDQMQNEVRILCQVNHRSLVRLLGCCLELEHPLLIYEYVSNGTLFDYLHRHSCDTREPLKLHQRLKIAHQTAEGLSYLHSAAVPPIYHRDVKSSNILLDDKLDAKVSDFGLSRLVELAEENKSHIFTSAQGTLGYLDPEYYRNFQLTDKSDVYSFGVVLMELLTAQKAIDFNREEESVNLAMYGKRKMVEEKLMDVVDPLLKEGACDLELETMKSLGYLAVSCLDDQRQKRPSMKEVADEIENLIKVVKGQVSKS 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1844g00003 655 Gene3D Transferase(Phosphotransferase) domain 1 439 654 - -
Vium1844g00003 655 SMART serkin_6 363 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1844g00003 655 ProSitePatterns Protein kinases ATP-binding region signature. 369 391 IPR017441 GO:0005524
Vium1844g00003 655 Coils Coil 317 337 - -
Vium1844g00003 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 486 498 IPR008271 GO:0004672|GO:0006468
Vium1844g00003 655 ProSiteProfiles Protein kinase domain profile. 363 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1844g00003 655 SUPERFAMILY Protein kinase-like (PK-like) 336 639 IPR011009 -
Vium1844g00003 655 FunFam Wall-associated receptor kinase-like 20 439 654 - -
Vium1844g00003 655 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 335 438 - -
Vium1844g00003 655 Gene3D Phosphorylase Kinase; domain 1 321 438 - -
Vium1844g00003 655 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 31 644 IPR045274 GO:0007166
Vium1844g00003 655 Pfam Protein kinase domain 364 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1844g00003 655 CDD STKc_IRAK 369 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1844g00003 Vium-Chr1844 77634 81355 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1844g00003 34 655 Receptor kinase-like Gene Family AT5G02070 54.905 0.0 675
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vium1844g00003 Pkinase 1.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1844g00003 - - aprc:113862410 1025.77