Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1842g00001 ATGGAGGCAGCCGTAGGAGCTCCGTCGAATCACCCTTCCGTCCAAGAAGTCTTCCTAGATTTCAAGGGCCGCAGAGCTGCCATTGTTAAGGCCCTCACCATTGATTACGAAGACTTCTTTCAGCAATGTGATCCAGGGAAGGATGATCTTTGTCTTTATGGATTTCCTAATGAAGTCTGGCAAGTCGATCTACCTGCTGAGGAGGTGCCTGCAGAGATCCCAGAGCCAGTATTAGGTATTAACTTTGCCAGAGATGGGATGAAAGAACGGGACTGGGTATGCTTTGTTGCTGCGCACAGTGATACATGGTTAATAGCTGTGGCTATGTTTTTTGGAGCAAGATTTGGGTTTGATAAGGCTGATAGGGATAATCTTTTTAATATGATAAATGATCTTCCAACAGTATTCGAGGCTGTTGTTGGGAAGGTCAAGAAACAAGGAAAGAAAAAGTCACCAGTTTCTAATCATAACAACAAATCTAAATCAAACTTCAAGAAAGGTTCTGAATCTCAAGAAAATTATTCAAAAACAATGGAATCAAAGGAAGATGAGGAAGAAGAGGAAGAAGAGGAGGAGGAAGAGCAGGGAGAGACACCTTGTGGGACATGTGGAGAGAACGATGCGGGTGGTGTGGATGGATTCTGGATTTGTTGTGACATTTGTGAAAGGTGGTTTCATGGGAAATGTGTGAAGATTACCCGTTCTAAGGCTGCCTATATCAAGCATTACAAATGTCCATCTTGCAGCATCAAGAAGCTCGTCAATTGTAGTTTCTAG 777 0.4311 MEAAVGAPSNHPSVQEVFLDFKGRRAAIVKALTIDYEDFFQQCDPGKDDLCLYGFPNEVWQVDLPAEEVPAEIPEPVLGINFARDGMKERDWVCFVAAHSDTWLIAVAMFFGARFGFDKADRDNLFNMINDLPTVFEAVVGKVKKQGKKKSPVSNHNNKSKSNFKKGSESQENYSKTMESKEDEEEEEEEEEEEQGETPCGTCGENDAGGVDGFWICCDICERWFHGKCVKITRSKAAYIKHYKCPSCSIKKLVNCSF 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1842g00001 258 ProSitePatterns Zinc finger PHD-type signature. 200 248 IPR019786 -
Vium1842g00001 258 MobiDBLite consensus disorder prediction 181 198 - -
Vium1842g00001 258 Coils Coil 171 198 - -
Vium1842g00001 258 SUPERFAMILY FYVE/PHD zinc finger 188 252 IPR011011 -
Vium1842g00001 258 Pfam Alfin 14 140 IPR021998 GO:0006355|GO:0042393
Vium1842g00001 258 MobiDBLite consensus disorder prediction 147 202 - -
Vium1842g00001 258 Pfam PHD-finger 200 249 IPR019787 -
Vium1842g00001 258 ProSiteProfiles Zinc finger PHD-type profile. 197 251 IPR019787 -
Vium1842g00001 258 PANTHER CPG BINDING PROTEIN 12 252 IPR045104 GO:0006355|GO:0042393
Vium1842g00001 258 FunFam PHD finger alfin-like protein 192 250 - -
Vium1842g00001 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 249 IPR013083 -
Vium1842g00001 258 SMART PHD_3 199 249 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1842g00001 Vium-Chr1842 7799 10467 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1842g00001 6 252 Alfin-like Transcription Factor Family AT3G42790 60.081 9.48e-92 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium1842g00001 Alfin 5.6e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1842g00001 K26274 - vvi:100247536 308.531