Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1841g00032 ATGAAGGGGAAAAGCCACAAGATTGGAAAGAAGCAGAGTAGGAAGATGAAGGGCGCGTTGACTAACAGCACCACCAGGCACTTGCAGCTTCAGCTAGGTAAAGTCTCCCTCATTCCTCTCAACCAACCATCTTCTACCACTTCTTCCGATGTTTCTTGCTTCCAGAACCTTCTGCATTCCGAACCTCCCAACACGTCTTCATCGCGCGTTCCGCTCACCGACGATTCCTTCGCCGACGACAGATACTGTATTCTCAGCCAGGACTTCTTCTGCACTCCGGATTACATCACTCCGGACAATCAGCATACTTTGAATGGCTTTGATTGCGATATGGATACACCATGCCCCAAATCGCCTGAGAAGCTTAACACTACGAAGAGTAAGAGATGTCGACCAGATGTTATGTCGGTTCAACCTCTCAGCCCCACCTTTTCTGGTGACCATCAGCCAGCTGTGGAACTGGGAAAGGATTCTGTTGACGACGAATTTGCTTTGGAGAAAACAATAGCAGCTGCTAAACCAAAGGGTCAGAATTACGTGTCCCAATCTGCAATTGCATTGCGTTTCCGGGTTATGCCTCCTCCTTGCTTTAGGAACCCATTTTTAAAAGATGTTACAGAAAAGGAGATTGATTCTTTTGGAAACCAAAGATTGAAATGTGCAGGCCTCTTCCCTGCAATCAGTGGTGGTGACGGGCTTTCACGCTATCGTGCTGACTTTCATGAAATTGAGCAAATTGGTGGAGGGAACTTTAGTCATGTTTTCAAAGTATTAAAACGACTAGATGGATGTTTGTATGCTGTTAAACGGAGCATCAGACCGTTACGCCTTGAAACAGAAAGGACAAAAGCTTTGATGGAAGTTCAAGCTTTGGCGGCCCTAGGTTTGCATCAGAACATCGTGGGCTACTATTCTTCATGGTTTGAAAATGAACAGCTGTACATTCAGATGGAGTTATGTGATCACAGCTTATCTATAAGAAAATGCCCAGAGGCATTTACAGAAGCACAAGTGTTAGATGCCTTATTTCAGGTTGCCAATGCTCTGCGATTTATTCACGAGAAGGGAATGGCTCATCTAGATGTGAAACCCAATAATATTTATGTGAAGAGTGGTGTTTATAAACTCGGTGATTTTGGATGTGCGACTCTTCTTGATAGTAGCCTCCCAATTGAAGAGGGTGACGCACGTTATATGCCCCAGGAAATTCTTAATGAAAATTATGATTATCTAGACAAGGTTGATATCTTCTCCTTGGGAGCTTCTATTTATGAACTAATCCGCAGATTGCCTTTGCCAGAATCAGGATGTCAATATTTTAACCTCAAGGAAGGCAAGTTTCCCCTCTTGCCTGGTCATTCCTTGCATCTTCAAAACTTGCTCAAGGTCATGATGGACCCTGATCCGGTTAAGCGGCCTTCTGCTAGAGAATTGGTAGAAAACCCAATTTTTTGTAAGAAGACTCAAAGAATTGCGTGA 1479 0.4408 MKGKSHKIGKKQSRKMKGALTNSTTRHLQLQLGKVSLIPLNQPSSTTSSDVSCFQNLLHSEPPNTSSSRVPLTDDSFADDRYCILSQDFFCTPDYITPDNQHTLNGFDCDMDTPCPKSPEKLNTTKSKRCRPDVMSVQPLSPTFSGDHQPAVELGKDSVDDEFALEKTIAAAKPKGQNYVSQSAIALRFRVMPPPCFRNPFLKDVTEKEIDSFGNQRLKCAGLFPAISGGDGLSRYRADFHEIEQIGGGNFSHVFKVLKRLDGCLYAVKRSIRPLRLETERTKALMEVQALAALGLHQNIVGYYSSWFENEQLYIQMELCDHSLSIRKCPEAFTEAQVLDALFQVANALRFIHEKGMAHLDVKPNNIYVKSGVYKLGDFGCATLLDSSLPIEEGDARYMPQEILNENYDYLDKVDIFSLGASIYELIRRLPLPESGCQYFNLKEGKFPLLPGHSLHLQNLLKVMMDPDPVKRPSARELVENPIFCKKTQRIA 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1841g00032 492 SUPERFAMILY Protein kinase-like (PK-like) 233 486 IPR011009 -
Vium1841g00032 492 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 94 485 - -
Vium1841g00032 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 357 369 IPR008271 GO:0004672|GO:0006468
Vium1841g00032 492 Gene3D Phosphorylase Kinase; domain 1 231 318 - -
Vium1841g00032 492 Gene3D Transferase(Phosphotransferase) domain 1 319 489 - -
Vium1841g00032 492 ProSiteProfiles Protein kinase domain profile. 240 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1841g00032 492 SMART serkin_6 240 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1841g00032 492 FunFam WEE protein kinase 230 318 - -
Vium1841g00032 492 MobiDBLite consensus disorder prediction 1 22 - -
Vium1841g00032 492 FunFam Wee1-like protein kinase 319 488 - -
Vium1841g00032 492 Pfam Protein kinase domain 240 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1841g00032 492 ProSitePatterns Protein kinases ATP-binding region signature. 246 269 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1841g00032 Vium-Chr1841 211701 215079 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1841g00032 11 484 Core Cell Cycle Gene Families AT1G02970 58.159 0.0 554
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WEE Vium1841g00032 Pkinase 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1841g00032 K06632 - gmx:547742 830.091