Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1841g00027 ATGTCAAATATTTCAGGTGATGAAGGAAGCTTCTCCTCAGGAAACAATGGGGAAGAAGTTCATCAAGAAACCCAACACCAACACCCTCAAAACCACCTTCATGACTCTACTTCAGGACCATCTGCTGCTTCCAATACCAATGCCTTCCACCTAAATCCAAAAACCAGAAGAAAAGAAACCTTTCCAGGAACCCCAGGCAAATACTCAACTAAAATAGACCCCAGTGCTGAAGTTGTTGCTTTATCACCAACCACACTGATGGCAACAAATAGATTCGTGTGTGAGATCTGCAACAAAGGGTTTCAGAGGGACCAAAACCTTCAGTTGCACCGCAGAGGTCACAATCTTCCGTGGAAACTGAGGCAACGAACAAGCACTGAGGCTAAGAAACGTGTGTATGTTTGCCCTGAGCCATCATGCGTGCACCATAACCCAGGTCGTGCATTAGGAGACCTCACTGGCATCAAAAAGCACTATAGCCGCAAACACGGTGAGAAGAAATGGAAATGTGACAAGTGCTCTAAGAGATACGCAGTGCAGTCTGATTGGAAGGCCCACCAGAAAACTTGTGGCACCAGGGAATACAAATGTGACTGTGGAACCATATTTTCCAGGAGAGATAGTTTTATCACTCACAGAGCTTTCTGTGATGCATTAACTGAAGAAAACAACAGAGTGAACCAGGGTCTGACAAGTGGCATGCCACCAAACCTGCAGAATCAAATACCGGATCTTATGTCTACCATGCCTCTAAACACTAGTCCCAACACAGCTTATGACCCTAAGAACCCACTGAAATCACTCCCCCAAGAACTTGTCCCAATACCATTCAAGTCTATGAGCATGGGAGGGGGCATGTTCTCTACCAATGCAGGTGCACTTTTTGGTGGCCCAAAAAGCATGTCTCCTTCTTCTTCCAGCCTCCAACTGGGTTCCAACACCTCATCAAGCTTCAATTACTTGCAAGACAACAAAAACGGAGGACTAATTGCTGCCTCGGCTCAGATGTCTGCAACAGCTTTGTTACAGAAAGCAGCCCAAATGGGTGCCACTGCAAGCAATACCATTAACTCCCCCATGATGCAAAAAGGCTTTGTTAGTAGCACTGCTGCTCCTGATCATGTTTCTTCCACTAGGCCGCCATATTCTGGTGCCATGCTGCAGCATAACAACTCCTACGACCATTTCTCTCCACAGCCTGATCTCTCCAACATGGCTGGGGTGAGTGGTGGAGGAGCATTCATCAATCAGTTTTTTCATAAAGGACAAGAAATTTCACAAGTTTTTGACACCAACACTGCCGGGTCTGCTATGAACGATGTGGGAATGTTCAGCCAAATGCCTCTGGGGAGTGACCACAATCCGGGATTGATGAAGAATGTGGAACAAGATGTTAGTAATTGTTCTGGTTTGATCCATGGAAAAGACGTGGTTGAAAATAACCCAATGCAGCCATCAAGGTTTGGAGGGAGTGACATGACAACTGTTCATGACTTTTTGGGCATTGGTGGTTCAACTTCTAGAGTCATGAACCATTTTCATCACCATTTTCCACACGAGGATTCAGCAGCAATGGAGGAACCCATATGGGATGTTTGA 1599 0.4584 MSNISGDEGSFSSGNNGEEVHQETQHQHPQNHLHDSTSGPSAASNTNAFHLNPKTRRKETFPGTPGKYSTKIDPSAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSTEAKKRVYVCPEPSCVHHNPGRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMPPNLQNQIPDLMSTMPLNTSPNTAYDPKNPLKSLPQELVPIPFKSMSMGGGMFSTNAGALFGGPKSMSPSSSSLQLGSNTSSSFNYLQDNKNGGLIAASAQMSATALLQKAAQMGATASNTINSPMMQKGFVSSTAAPDHVSSTRPPYSGAMLQHNNSYDHFSPQPDLSNMAGVSGGGAFINQFFHKGQEISQVFDTNTAGSAMNDVGMFSQMPLGSDHNPGLMKNVEQDVSNCSGLIHGKDVVENNPMQPSRFGGSDMTTVHDFLGIGGSTSRVMNHFHHHFPHEDSAAMEEPIWDV 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1841g00027 532 MobiDBLite consensus disorder prediction 1 20 - -
Vium1841g00027 532 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Vium1841g00027 532 MobiDBLite consensus disorder prediction 31 51 - -
Vium1841g00027 532 Pfam Zinc finger, C2H2 type 92 114 IPR013087 -
Vium1841g00027 532 SUPERFAMILY beta-beta-alpha zinc fingers 91 189 IPR036236 -
Vium1841g00027 532 MobiDBLite consensus disorder prediction 1 71 - -
Vium1841g00027 532 Gene3D Classic Zinc Finger 131 216 - -
Vium1841g00027 532 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 32 508 IPR031140 -
Vium1841g00027 532 FunFam protein indeterminate-domain 12-like 71 139 - -
Vium1841g00027 532 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Vium1841g00027 532 FunFam protein indeterminate-domain 5, chloroplastic-like 146 225 - -
Vium1841g00027 532 Gene3D Classic Zinc Finger 92 130 - -
Vium1841g00027 532 SMART c2h2final6 133 163 IPR013087 -
Vium1841g00027 532 SMART c2h2final6 92 114 IPR013087 -
Vium1841g00027 532 SMART c2h2final6 168 188 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1841g00027 Vium-Chr1841 187714 190309 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1841g00027 52 370 IDZ Gene Family AT3G50700 52.299 8.07e-108 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium1841g00027 zf-C2H2 0.0054 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1841g00027 - - gmx:100782774 921.383