Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1841g00026 ATGGATGCGTGGAACGAAGATTTTGCGGAGCAGGAGATTGGGAACTCCGCGGAATCGTTCCAAAAGTTTTTACTTTCGCAGAGAGATCTCTTCCACAGCCAGATCGATCAGTTTCAGGAAATCGTCGTCACGCAATGCAAACTCACCGGCGTCAACCCTCTCTCTCAAGAAATGGCAGCTGGTGCTTTGTCAATAAAAATTGGAAAAAGACCTAGGGATTTATTGAACCCAAAGGCTGTAAATTACATGCAATCAATTTTTTCGATTAAAGATTCTATTAGCAAAAAGGAGTTGCGCGAGATCAGTGCTTTATTTGGTGTCACAGCGACGCAGGTGCGTGACTTTTTCACTGGGCAGCGCTCAAGAGTGAGGAGACTAGTGCAGCTTTCAAAAGAGAGGGCACTAGGTTCCAATTCTTGTGAAGATCCTCACGATGATAAAATAATTCCTGATCCTGTTAGACTAATTAATCCAGCTTCCGTAAACTCTACTGTCCCATCCAATGCTGAAGAAGCATCTTGTTCAACACAGGATGCATCCTTGCCTGACCTAGATGATTCAGATAAACATTTTGTTGATAATATTTTTAGTTTAATGCAACAAGAAGAGACATTTTCCGGGCAAGAGAGATTGATGGAGTGGATATTGACGATACAGAATTTTTCAGTATTGTTGTGGTTTTTGAGCAGAGGGGGTGGAATAACTTTAGCTACTTGGTTGAGTAAGGCAACTGCTGAGGAGCAAACCAGTGTCCTTCTTCTTATCTTGAAGGTTCTTTGTCATTTGCCTTTACATAAAGCCATTCCCATGCACATATCAGCTATATTGCAGAGTGTAAATAAACTTCGGTTCTACAGGACATCAGACATATCAAACAGGGCAAGGATTTTGTTATCAAAGTGGAGCAAATTATTAGCGAGGAACCAAGTAATAAAGAAGCCCAATGGTGTTAGGCCTTCTAGTGATGGGCATAAAGAGTTGATTTCTCAGAGTATTGGTCAATTTGTGGGCTCTGAATCATGGCATTCCAATATTGATGTTCCTGAAGACTTTCTTTCACTTTCAAGCGAATCTCTGGACAATTTCAGGAAAGTGGGATCTCCACAAGCTGCGAAATTGTTGCCTCCTAGCTTGGATGATTCTAATAAAAAGTCTACACTTGGTGTTTCTTCATCTCAATCTAGAGAGCGCAGAAAAGTGCAATTGGTGGAACAGCCAGGCCAAAAGTCAGTTAGCAGAAGTTCACAGGTGACAAGAGCAGGGTCTGTAAGTCAAGGTCGGCCCATGTCCGCTGATGATATCCAGAAAGCAAAAATGCGTGCTTTATTTATGCAGAGTAAGTATGGGAAATCCGGTTCAAAAGAAAGTAAAGAAACAAAGATTGATAGTCTGAATAAACAACCTCAGACAATTCCTGCCAGTATTGCAGCTTGCTCTTCTAAAGTTCCTACTCCTCCCAAAATTGATGAAAACAAGAAACCTTTGTTACTTGCCTCTAAAACCAGCAATAGGCTGGAAGCTTATTCAAAACCAAATGTGAAGGAACCTCTCTGGGAGAAGTGCATGAGGATTCAGATACCATGGAAAACACCAGCAGAAGTAGAACTTAAAGATAGCTGGAGCGTTGGTGGCGGGGAAAACAGCAAAGAGGTTGATGTCCAGAGAAACAGAGACCGCAGGGAAAAGGAAACTATATATAAAACTATCCAAGAAATCCCACCTAACCCCAAGGAGCCTTGGGACCTTGAAATGGACTATGATGACACTTTGACGTTGGAAATTCCTATTGAACAGTTGCCAGATGGTGACGGTGCAGACATAACAGTTTCCCCCAATCAGGTTGCAGAGCATACTGTTCAAGGGGTGGCCTCCACTTCTTCGACAAGTGTGGCTCCTGCTGAGCCTGATTTAGAATTGCTTGCCGTACTGCTGAAAAATCCAGAGTTGGTATTTGCCTTAACTTCTGGACAAGCGGGTAGCATACCGGGTGAAGACGTAGTGAAGCTGCTTGACATGATCAAGAGAGGAGGTGCGAACTTGGGTTTAAGTGAAAATACAAATGGGAGCTATGGCACGAGTGTAAAAGCCCCGGATAAGGTGGAAGTTTCGCTCCCATCTCCAACCCCTTTAAGCGATCCAAGAACGAATGGATGGAGCTCAGAAGCATCAAAAAACCCCTTTTCACGGCGAAGTGTAGCATCTGATAGAATTATCCAGAACCATGCTGCAGTGACAACTACCAACTTACTAACTCAGATTCCCATGACTAGCACTACTGCACTAAGGCAACAGCCAGCAGTAGTGGTTTCATCTTCGAGGCATCTCTCAAGCACAACAGTTTCTCCATATTCACTGCATCAGGCAACTAATGTTAATCCTGAAAAGCAACAACCACTGGGGCATGTACAAATACCATCCTCAAATGTAGGCTTAACCATGAAGAAGAACTTAATCACTACCAATGCACCTTCAGTTAACTATTCTGGCATTCACTCAGCTGTAGCAATGCGGGGTAATGGCACCAATTATGTAAAACCCGTACATAGTATGAATGTACAACACGAGGGTGTGTCTAATTCCTTCCCACAGTCATCCTTCAAGCTACCCTCACCAACGCCGTCAAATTCAGCCTCACAGCAGCAAAGACATCAACAACATATAGTCCAGGAAGCCCATTACACCGAACCTCCTTATCGTAACCCTAGCCGTTCCTACCCACCACAAACCGAAAAATCAGACCATGGGTCTGAAAGCGCGTGGAGAATTAGGCAAGATGTTCCATTCAGTTCTCAAAGAAATCCTAACAACTATAATACAATGGTTGGGGGATCCAGGCAATCTGGTTTTTGGGATAGAAATAATCAAGGAGGGGAAGATTTTGAATCATGGAGTCCTGAAAATAGTCCAACTAGAAATCCTAGGTATATACCAGGTAGAAACTACCCAGATTCCAGAGTGAATCATGGAAGAAATCATAGACCTGAATGGTCAAGACAGAGGGGTTCTTCTGAACACTGGGACCCTGACAGGCAGGGAAATAGAAAGTGGCATGATCAGAGGCGATAA 3066 0.4331 MDAWNEDFAEQEIGNSAESFQKFLLSQRDLFHSQIDQFQEIVVTQCKLTGVNPLSQEMAAGALSIKIGKRPRDLLNPKAVNYMQSIFSIKDSISKKELREISALFGVTATQVRDFFTGQRSRVRRLVQLSKERALGSNSCEDPHDDKIIPDPVRLINPASVNSTVPSNAEEASCSTQDASLPDLDDSDKHFVDNIFSLMQQEETFSGQERLMEWILTIQNFSVLLWFLSRGGGITLATWLSKATAEEQTSVLLLILKVLCHLPLHKAIPMHISAILQSVNKLRFYRTSDISNRARILLSKWSKLLARNQVIKKPNGVRPSSDGHKELISQSIGQFVGSESWHSNIDVPEDFLSLSSESLDNFRKVGSPQAAKLLPPSLDDSNKKSTLGVSSSQSRERRKVQLVEQPGQKSVSRSSQVTRAGSVSQGRPMSADDIQKAKMRALFMQSKYGKSGSKESKETKIDSLNKQPQTIPASIAACSSKVPTPPKIDENKKPLLLASKTSNRLEAYSKPNVKEPLWEKCMRIQIPWKTPAEVELKDSWSVGGGENSKEVDVQRNRDRREKETIYKTIQEIPPNPKEPWDLEMDYDDTLTLEIPIEQLPDGDGADITVSPNQVAEHTVQGVASTSSTSVAPAEPDLELLAVLLKNPELVFALTSGQAGSIPGEDVVKLLDMIKRGGANLGLSENTNGSYGTSVKAPDKVEVSLPSPTPLSDPRTNGWSSEASKNPFSRRSVASDRIIQNHAAVTTTNLLTQIPMTSTTALRQQPAVVVSSSRHLSSTTVSPYSLHQATNVNPEKQQPLGHVQIPSSNVGLTMKKNLITTNAPSVNYSGIHSAVAMRGNGTNYVKPVHSMNVQHEGVSNSFPQSSFKLPSPTPSNSASQQQRHQQHIVQEAHYTEPPYRNPSRSYPPQTEKSDHGSESAWRIRQDVPFSSQRNPNNYNTMVGGSRQSGFWDRNNQGGEDFESWSPENSPTRNPRYIPGRNYPDSRVNHGRNHRPEWSRQRGSSEHWDPDRQGNRKWHDQRR 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1841g00026 1021 MobiDBLite consensus disorder prediction 708 726 - -
Vium1841g00026 1021 Gene3D - 66 127 - -
Vium1841g00026 1021 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 106 1002 - -
Vium1841g00026 1021 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 230 309 IPR035441 -
Vium1841g00026 1021 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 234 317 IPR035441 -
Vium1841g00026 1021 SMART HOX_1 68 130 IPR001356 GO:0003677
Vium1841g00026 1021 MobiDBLite consensus disorder prediction 405 429 - -
Vium1841g00026 1021 MobiDBLite consensus disorder prediction 985 1021 - -
Vium1841g00026 1021 MobiDBLite consensus disorder prediction 855 887 - -
Vium1841g00026 1021 MobiDBLite consensus disorder prediction 855 1021 - -
Vium1841g00026 1021 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677
Vium1841g00026 1021 MobiDBLite consensus disorder prediction 370 431 - -
Vium1841g00026 1021 SUPERFAMILY Homeodomain-like 69 130 IPR009057 -
Vium1841g00026 1021 MobiDBLite consensus disorder prediction 683 726 - -
Vium1841g00026 1021 MobiDBLite consensus disorder prediction 379 396 - -
Vium1841g00026 1021 MobiDBLite consensus disorder prediction 539 559 - -
Vium1841g00026 1021 MobiDBLite consensus disorder prediction 923 974 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1841g00026 Vium-Chr1841 174843 183342 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1841g00026 464 730 Homeobox Transcription Factor Family AT4G02560 45.353 4.32e-50 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1841g00026 - - gmx:100806633 1632.08