Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1841g00024 ATGGTGGAAAGAAGAAGAAAGCCTCTGATACTGTGTTCCACCAAACATGTCATCAATTCAACTGTTCCAACCGCCAATCTCTTCCACCATGATTCTTCTCCCTCCTTCTTCCGTTTTCCTGTCGGAATTCTCCGATTCTCCGACCTCACAAATCTCTCTGTCGACCACTCTTCCCTGCTTGCCCTCTCCACCCCTCTTCTCAAAACCCTCTCCATCACTTCAGGCTCACCGGTTCTTGTCAAGAATGTTGGCACCAACACACAGAAAATTGCAGTGGCTGTTGCTTTGGATCCACCAGGCACCACGGCTAACACAGACTCACAGTCTTCTAGTCCTTCTTCTTCTTCTTCTCCTCGAATAATGCTTTTTTTTCCTTCTTGTCATTTCCCTTTTAATGGTTCTGTGTTAGATGATCAAATAGCCTATGTATCGCCTCTTTTAGCCTTTAACCTTAACTTGCACGTTGCGTGCTTAAAATCCATTCTTCACCACGGGCAAGAGGCTCTGGCTTCTTATTTCGGTCCTCGAGATAAAAGGGGTGATGAGGATGCTGCTAAAATAACTGTGGATTCTGTCATCGACGTAGAATTGGAACCACTTGCTCTGCCTCCAAAGTTTGTCTCTCTTCTGAGGGTTTCTTTTGTGAAGATACCAGAATGTGGCATCCTTGAATCTATTAGATCAAGTTCACCTTTTGAATCAGAAGAGCGGCAAGACATGATCGACTTGTCATTGCAAAAATACTTTGAAGTCGACAGGTTCTTGTCCAAGGGAGATGTTTTTGGGATTAACATAAGTTGGAATTGCAATTCCCCCATTTGCATTCCTTGTAACCAAAGATCATTAAATCAAAATGACAACCTTATCTGTTTCAAGGTTGTTGGTATGGAACCATCAGATGAACAGTTTTTTCGTGTCAATAACACCTTAACTGCTCTTGTGCTGGTAGGGAGTTCTCCATCCGCACTCCCTCCAGATTTGTTAATTGGTGAACCTGGAGGACCGGTGCCTTTGCGAGGGGATACTGTGAACATCTTGGCTTCGATACTCACACCAACTTTCTGTCCATCAGTGCTTTCTTCCAAGTTTAGGGTGTCTGTTCTATTGTATGGTTTGGCAGGTTGTGGGAAAAGGACTGTCGTTAGATATGTTGCTTGTCGACTTGGCTTGCATGTGGTGGAATATAACTGTCATGATCTTATGGTGTCTGATAGAACATCTGTTGCTCTAGCACAAGCTTTCAAGACAGCTCGAAGGTACTCGCCAGCAATACTTCTTCTTCGTCATTTTGATGTATTTCGAGAATCACAATCGCCTGAGGGTTCACCATATGATCAAAGAGGAAATACATCTGAAGTTGCTGCAGTTATTAGGAAATTCACTGAGCCCGTCAGTGAACAATATGATAGTAATTCCCTGGGGAAATCAAACGTTGAATCTGTGGAGACGAGTGCTGAAAAGGCAAGTGGACATCAGGTCCTATTGATTGCTGCTGCTGACAGTTCAGAAGGTCTTCCATCAACTATCAGACGCTGTTTTAGCCACGAAATAAGCATGGGGCCTTTGACTGAAGAGCAAAGAGCTGAAATGCTATTACAGTCATTGCAAAGTTTTTCTGAACTCTTCTCTAATACTGATTCAGAAGCTTTAGTAAAAGAAATAGTTGGACAGACATCTGGTTACATGCCCAGAGATATTCGTGCTTTAATTGCTGATGCCGGTGCCAACTTATTTCCGAGAAATAATGCTAAAGTAGACAAAGACGTCTCTGATGATGTAGATAGTTTATTTAATTCCAAGATGGCAGAGGACACCAATCACGGGAAAGTTTCACATCAGATTCCTGGGAAAGAAGACTTGTTGAATGCTTTGGAGCGATCAAAGAAAAGAAATGCGTCAGCATTGGGTACTCCAAAGGTTCCAAACGTGAAATAGGAAGATGTTGGTGGGCTTGAAGATGTCAAAAAATCAATTCTGGATACTGTTCAGTTACCTCTCTTGCATAAAGATCTATTTGCATCTGGATTACGCAAGCGATCCGGTGTTCTTTTGTACGGTCCCCCTGGAACTGGCAAAACATTATTGGCAAAAGCTGTTGCTACAGAATGTTCCTTAAATTTTCTTAGTGTGAAAGGTCCTGAACTGATCAACATGTACATTGGAGAGTCTGAAAAGAACGTTCGAGACATTTTCCAGAAGGCAAGATCTGCACGTCCATGTGTCATCTTCTTTGATGAGCTTGATTCACTTGCACCAGCTCGGGGTGCTTCTGGAGATTCTGGGGGTGTTATGGACAGAGTGGTTTCTCAGATGCTTGCAGAGATTGACGGCTTAAGTGATTCAACACAGGATCTGTTTATTATAGGTGCAAGTAATAGACCAGATTTGATAGACCCAGCCCTTCTGCGCCCTGGTCGATTTGATAAACTACTGTATGTTGGAGTTAACTCTGATGCATCTTACAGGGAACGGGTGCTGAAAGCTCTTACCCGAAAGTTCAAATTGCATGAAGATGTCTCACTTTACTCCATTGCAAAAAAATGTCCACCAAACTTCACTGGTGCAGACATGTATGCCTTGTGTGCAGACGCTTGGTTCCATGCTGCAAAGAGAAAAGTTTTGAGTGCAAATCCAGAGTCGACCAGCAAAGACAATGAAGCAGATTCTGTTGTTGTTCAGTATGATGACTTTGTCCAGGTCTTAGAAGAGCTGTCACCTTCCCTCTCAATAGCTGAGCTTAAGAAGTACGAACAACTGAGAGATCAGTTTGAAGGCACCTCTGGATGA 2787 0.4309 MVERRRKPLILCSTKHVINSTVPTANLFHHDSSPSFFRFPVGILRFSDLTNLSVDHSSLLALSTPLLKTLSITSGSPVLVKNVGTNTQKIAVAVALDPPGTTANTDSQSSSPSSSSSPRIMLFFPSCHFPFNGSVLDDQIAYVSPLLAFNLNLHVACLKSILHHGQEALASYFGPRDKRGDEDAAKITVDSVIDVELEPLALPPKFVSLLRVSFVKIPECGILESIRSSSPFESEERQDMIDLSLQKYFEVDRFLSKGDVFGINISWNCNSPICIPCNQRSLNQNDNLICFKVVGMEPSDEQFFRVNNTLTALVLVGSSPSALPPDLLIGEPGGPVPLRGDTVNILASILTPTFCPSVLSSKFRVSVLLYGLAGCGKRTVVRYVACRLGLHVVEYNCHDLMVSDRTSVALAQAFKTARRYSPAILLLRHFDVFRESQSPEGSPYDQRGNTSEVAAVIRKFTEPVSEQYDSNSLGKSNVESVETSAEKASGHQVLLIAAADSSEGLPSTIRRCFSHEISMGPLTEEQRAEMLLQSLQSFSELFSNTDSEALVKEIVGQTSGYMPRDIRALIADAGANLFPRNNAKVDKDVSDDVDSLFNSKMAEDTNHGKVSHQIPGKEDLLNALERSKKRNASALGTPKVPNVKXEDVGGLEDVKKSILDTVQLPLLHKDLFASGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLHEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSANPESTSKDNEADSVVVQYDDFVQVLEELSPSLSIAELKKYEQLRDQFEGTSG 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1841g00024 928 Gene3D - 345 545 IPR027417 -
Vium1841g00024 928 Pfam ATPase family associated with various cellular activities (AAA) 682 814 IPR003959 GO:0005524|GO:0016887
Vium1841g00024 928 Pfam ATPase family associated with various cellular activities (AAA) 367 518 IPR003959 GO:0005524|GO:0016887
Vium1841g00024 928 FunFam Peroxisome biogenesis protein 6 816 902 - -
Vium1841g00024 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 592 IPR027417 -
Vium1841g00024 928 PANTHER AAA-FAMILY ATPASE 58 924 - -
Vium1841g00024 928 SMART AAA_5 363 523 IPR003593 GO:0016887
Vium1841g00024 928 SMART AAA_5 678 818 IPR003593 GO:0016887
Vium1841g00024 928 ProSitePatterns AAA-protein family signature. 785 803 IPR003960 GO:0005524|GO:0016887
Vium1841g00024 928 Gene3D - 816 902 - -
Vium1841g00024 928 CDD RecA-like_PEX6_r2 654 813 IPR047533 -
Vium1841g00024 928 FunFam Peroxisome biogenesis protein 6 336 520 - -
Vium1841g00024 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 641 922 IPR027417 -
Vium1841g00024 928 Gene3D - 640 917 IPR027417 -
Vium1841g00024 928 FunFam Peroxisomal biogenesis factor 6 640 829 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1841g00024 Vium-Chr1841 134866 141725 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1841g00024 648 873 Calmodulin-binding Proteins AT3G56690 39.207 4.78e-40 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1841g00024 K13339 - gmx:100820183 1566.59